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[185150_at]

Description C16A11.2 /REP_DB=WormBase Gene ID /WP=CE27067 /TR=O76583 /GB=AAK31415.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_high_8_8 > 0      6grp_highest_nonorm > 90      6grp_total > 91      4grp_total > 07      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 120.6
(0.9)
P 		66.7
(-3)
M 		138.3
(2.2)
P 		149
(3)
P 		82
B 146.6
(3)
P 		98.9
(-0.5)
P 		63.9
(-3)
M 		102.5
(-0.2)
P 		83
C 128.1
(2.8)
P 		68.2
(-3)
A 		108.3
(0.9)
P 		129.8
(3)
P 		62
avr 131.8
(3) 		77.9
(-3) 		103.5
(-0.2) 		127.1
(2.5) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 169.9
(-0.2)
P 		185.9
(1.3)
P 		138.2
(-3)
P 		190.1
(1.6)
P 		205.5
(3)
P 		201
(2.6)
P 		67
B 180
(2.3)
P 		150.9
(-0.1)
P 		117.1
(-3)
P 		186.8
(2.9)
P 		187.9
(3)
P 		186.7
(2.9)
P 		71
C 181.5
(0.5)
P 		151.1
(-1.6)
P 		216.8
(3)
P 		201.3
(1.9)
P 		185.2
(0.8)
P 		131.8
(-3)
P 		85
avr 177.1
(0.3) 		162.6
(-2.1) 		157.4
(-3) 		192.7
(3) 		192.9
(3) 		173.2
(-0.3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 43.9
(3)
P 		14.5
(-3)
M 		36.1
(1.4)
P 		21.8
(-1.5)
P 		29
B 46.8
(3)
P 		24.4
(-1.2)
P 		14.8
(-3)
M 		21.8
(-1.7)
P 		32
C 42.4
(3)
P 		19.6
(-3)
A 		37.8
(1.8)
P 		21.9
(-2.4)
P 		23
avr 44.4
(3) 		19.5
(-3) 		29.6
(-0.6) 		21.8
(-2.4) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 31.3
(-2.8)
P 		66.1
(3)
P 		30.1
(-3)
P 		48.2
(0)
P 		62
(2.3)
P 		48.9
(0.1)
P 		36
B 62.6
(1.3)
P 		50.2
(-0.3)
P 		28.4
(-3)
P 		49.5
(-0.4)
P 		76.3
(3)
P 		69.6
(2.2)
P 		48
C 67.3
(3)
P 		46.1
(-1.7)
P 		55.2
(0.3)
P 		40.5
(-3)
P 		59.9
(1.3)
P 		44.1
(-2.2)
P 		27
avr 53.7
(0.4) 		54.1
(0.4) 		37.9
(-3) 		46.1
(-1.3) 		66.1
(3) 		54.2
(0.5) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185150_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4702
Sequence Type Exemplar sequence
Representative Public ID C16A11.2 NCBI
Target Description C16A11.2 /REP_DB=WormBase Gene ID /WP=CE27067 /TR=O76583 /GB=AAK31415.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026789, NM_001026788
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000042948 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4238207:4244066:1 None
NM_001026788 NCBI Caenorhabditis elegans C16A11.2a (C16A11.2) mRNA, complete cds. None
C16A11.2a ENSEMBL cdna:known chromosome:CEL140:II:4238197:4244822:1 gene:C16A11.2 A 
NM_001026789 NCBI Caenorhabditis elegans C16A11.2b (C16A11.2) mRNA, complete cds. None
SNAP00000042942 ENSEMBL cdna:SNAP chromosome:CEL140:II:4238207:4244689:1 None
C16A11.2b ENSEMBL cdna:known chromosome:CEL140:II:4238197:4244689:1 gene:C16A11.2 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4238205-4244688(+) 97.54 100.0
Public Domain and Genome References
Ensembl C16A11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33350 hypothetical protein C16A11.2 - Caenorhabditis elegans 0.0
blast AAT81207 Hypothetical protein C16A11.2a [Caenorhabditis elegans] ref|NP_001021959.1| C16A11.2a [Caenorhabditis elegans] 0.0
blast AAT81208 Hypothetical protein C16A11.2b [Caenorhabditis elegans] ref|NP_001021960.1| C16A11.2b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185150_AT
ggagaagcttttggagtcgagtgagctcacacaggaagcgaaaactaatgttattgatca
taatgttactattgatattctaacgttttccgctaaaattaaaggatttatggatgaagt
tgagaagagtttggttgttgaaccagcttcccaagaataccgtgacgcttttgtgtccta
tatgaatgatgtgagaactcaacttggcgaatatcactggaaagctaaactgactcaaga
caagactctcgctgaaaaggatacactggcggcgttaaggacaagaattcgacagaaaga
acgagaagtttcgaatacttctgatgaaatgaagaggctgaaacattttgaaaaagtgct
caaaaattgcctgaaattgcctttttatagactacttggcaatttgatcgaaattttttt
ttttgaaataaattctaaaaacaattccagtaaattctccaaatcccctaaaatctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAAGCTTTTGGAGTCGAGTGAG 105 519 1338 Antisense
GTCGAGTGAGCTCACACAGGAAGCG 22 475 1353 Antisense
TTGATATTCTAACGTTTTCCGCTAA 141 705 1409 Antisense
GTTTGGTTGTTGAACCAGCTTCCCA 180 451 1466 Antisense
CAGCTTCCCAAGAATACCGTGACGC 4 203 1481 Antisense
TACCGTGACGCTTTTGTGTCCTATA 272 649 1495 Antisense
AACTCAACTTGGCGAATATCACTGG 661 135 1533 Antisense
GACTCAAGACAAGACTCTCGCTGAA 378 373 1569 Antisense
ATTGCCTGAAATTGCCTTTTTATAG 275 7 1703 Antisense
TCCAGTAAATTCTCCAAATCCCCTA 546 589 1783 Antisense
TTCTCCAAATCCCCTAAAATCTCAA 412 689 1792 Antisense
Sequence Source Affymetrix Proprietary Database