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[185148_s_at]

Description Y53F4B.17 /REP_DB=WormBase Gene ID /WP=CE25397 /TR=Q9NAA2 /GB=CAB70107.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 23.1
(-3)
A 		25.6
(-2.8)
A 		49.7
(-0.5)
A 		87.3
(3)
A 		64
B 24.6
(-1.8)
A 		104.3
(3)
A 		5.6
(-3)
A 		73.4
(1.1)
P 		99
C 67.5
(-1.8)
A 		65.6
(-2.1)
A 		59.4
(-3)
A 		101
(3)
A 		42
avr 38.4
(-3) 		65.2
(0.3) 		38.2
(-3) 		87.2
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 34.1
(1.8)
A 		13.9
(-1.2)
A 		39.9
(2.7)
A 		41.9
(3)
A 		2.2
(-3)
A 		32.2
(1.5)
A 		40
B 43.5
(-0.2)
A 		50
(0.4)
A 		79.3
(3)
A 		46.5
(0)
A 		50.4
(0.4)
A 		12.9
(-3)
A 		66
C 55.9
(-0.8)
A 		61.7
(-0.1)
A 		89.1
(3)
A 		50.7
(-1.4)
A 		42.1
(-2.4)
A 		36.4
(-3)
A 		53
avr 44.5
(-0.5) 		41.9
(-0.9) 		69.4
(3) 		46.4
(-0.3) 		31.6
(-2.4) 		27.2
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 8.4
(-0.7)
A 		5.6
(-3)
A 		13
(3)
A 		12.8
(2.8)
A 		7
B 7.9
(-1.4)
A 		25.8
(3)
A 		1.3
(-3)
A 		15.6
(0.5)
P 		25
C 22.4
(3)
A 		18.9
(-0.9)
A 		20.7
(1.1)
A 		17
(-3)
A 		5
avr 12.9
(-1.6) 		16.8
(3) 		11.7
(-3) 		15.1
(1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.3
(0.4)
A 		4.9
(-0.5)
A 		8.7
(1.8)
A 		10.6
(3)
A 		0.7
(-3)
A 		7.8
(1.3)
A 		10
B 15.1
(0.9)
A 		16.6
(1.5)
A 		19.3
(2.5)
A 		12.3
(-0.1)
A 		20.5
(3)
A 		4.8
(-3)
A 		16
C 20.7
(2)
A 		18.8
(1.1)
A 		22.7
(3)
A 		10.2
(-3)
A 		13.6
(-1.4)
A 		12.2
(-2)
A 		13
avr 14
(1) 		13.4
(0.6) 		16.9
(3) 		11
(-1.1) 		11.6
(-0.7) 		8.3
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185148_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3703
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.17 NCBI
Target Description Y53F4B.17 /REP_DB=WormBase Gene ID /WP=CE25397 /TR=Q9NAA2 /GB=CAB70107.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064700(11), NM_064701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064700 NCBI Caenorhabditis elegans Y53F4B.16 (Y53F4B.16) mRNA, complete cds. 11/11 A 
NM_064701 NCBI Caenorhabditis elegans Y53F4B.17 (Y53F4B.17) mRNA, complete cds. 11/11 A 
SNAP00000043051 ENSEMBL cdna:SNAP chromosome:CEL140:II:15044783:15116261:-1 10/11 None
SNAP00000043052 ENSEMBL cdna:SNAP chromosome:CEL140:II:15053736:15061638:1 10/11 None
GENEFINDER00000043140 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15051975:15058031:-1 11/11 None
GENEFINDER00000043145 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15058117:15062854:1 11/11 None
Y53F4B.16 ENSEMBL cdna:known chromosome:CEL140:II:15051975:15055608:-1 gene:Y53F4B.16 11/11 A 
Y53F4B.17 ENSEMBL cdna:known chromosome:CEL140:II:15058117:15061947:1 gene:Y53F4B.17 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15058113-15061195(+) 81.72 91.5
Public Domain and Genome References
Gene Title

Ensembl Y53F4B.16
Y53F4B.17
Entrez Gene 190215 Entrez gene
190216 Entrez gene
SwissProt Q9NAB8 EMBL-EBI
Q9NAA2 EMBL-EBI
WormBase CE24423 Wormbase
CE25397 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61089 Hypothetical protein Y53F4B.18 [Caenorhabditis elegans] ref|NP_497103.1| Y53F4B.18 [Caenorhabditis elegans] 1.0E-177
blast CAE73454 Hypothetical protein CBG20903 [Caenorhabditis briggsae] 1.0E-167
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 1.0E-146
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 1.0E-135
blast CAB70107 Hypothetical protein Y53F4B.17 [Caenorhabditis elegans] ref|NP_497102.1| Y53F4B.17 [Caenorhabditis elegans] 1.0E-124
blast CAB70107 Hypothetical protein Y53F4B.17 [Caenorhabditis elegans] ref|NP_497102.1| Y53F4B.17 [Caenorhabditis elegans] 1.0E-123
blast CAB70107 Hypothetical protein Y53F4B.17 [Caenorhabditis elegans] ref|NP_497102.1| Y53F4B.17 [Caenorhabditis elegans] 1.0E-109
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 3.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000120 EMBL-EBI Amidase 5.0E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043145 1 374-396
Sequence
Target Sequence 
>C. ELEGANS:185148_S_AT
ggttttctgtgttccgatcggattcgagtagtccggcgccgtccaccagcaccaacgagg
aggtcgaagagcggagcttcagagctccatcggtcgattcgctcttcgtggagttcgacg
acagagagcttgctgctcgcgagcgcgagggaagtggtgaagttgttgccgagccggaag
cggagcccctggagtcgtcggagcctcgtcaccagaagaggccatcggatcagcgcccat
ccgacgacgtcatcgcttcgaagaaggcccgcacccttcatcatttctcggtggtgaata
tcactgtccacctcccggagaacgacagccatccggaactcctccatcttctcgctgaaa
ttgggcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTCTGTGTTCCGATCGGATTC 494 505 584 Antisense
GATCGGATTCGAGTAGTCCGGCGCC 520 379 599 Antisense
TCCACCAGCACCAACGAGGAGGTCG 187 589 625 Antisense
GCGGAGCTTCAGAGCTCCATCGGTC 10 291 654 Antisense
CGATTCGCTCTTCGTGGAGTTCGAC 134 249 678 Antisense
GACGACAGAGAGCTTGCTGCTCGCG 529 379 700 Antisense
TGGTGAAGTTGTTGCCGAGCCGGAA 85 553 738 Antisense
AGAAGAGGCCATCGGATCAGCGCCC 157 75 797 Antisense
GTCATCGCTTCGAAGAAGGCCCGCA 131 467 832 Antisense
TGGTGAATATCACTGTCCACCTCCC 677 551 875 Antisense
CATCTTCTCGCTGAAATTGGGCCTC 400 213 928 Antisense
Sequence Source Affymetrix Proprietary Database