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[185147_at]

Description W09G10.2 /REP_DB=WormBase Gene ID /WP=CE14766 /TR=O16639 /GB=AAB66111.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 16      4grp_high_8_8 > 26      6grp_total > 15      4grp_total > 38      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 470.2
(3)
P 		267.6
(-1.5)
P 		201.6
(-3)
A 		295.3
(-0.9)
A 		269
B 421
(3)
P 		295.5
(0.3)
P 		138.2
(-3)
A 		232.8
(-1)
P 		283
C 458
(3)
P 		243
(-1.4)
P 		162.3
(-3)
P 		247.2
(-1.3)
P 		296
avr 449.7
(3) 		268.7
(-0.8) 		167.4
(-3) 		258.4
(-1.1) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 437.5
(3)
P 		312.4
(0.6)
P 		184.1
(-1.8)
P 		197.5
(-1.5)
P 		161.1
(-2.2)
M 		119.2
(-3)
A 		318
B 419.5
(3)
P 		362.6
(1.7)
P 		222.5
(-1.4)
A 		204.4
(-1.8)
P 		172.2
(-2.5)
P 		150.4
(-3)
P 		269
C 380.6
(3)
P 		330.5
(1.7)
P 		226.6
(-0.8)
P 		181.2
(-2)
A 		140.5
(-3)
M 		151.4
(-2.7)
P 		240
avr 412.5
(3) 		335.2
(1.3) 		211.1
(-1.4) 		194.4
(-1.8) 		157.9
(-2.6) 		140.3
(-3) 		272
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 171.2
(3)
P 		58.1
(-2.3)
P 		52.7
(-2.6)
A 		43.2
(-3)
A 		128
B 134.3
(3)
P 		73
(-0.6)
P 		32
(-3)
A 		49.6
(-2)
P 		102
C 151.6
(3)
P 		69.9
(-1.5)
P 		56.6
(-2.2)
P 		41.7
(-3)
P 		110
avr 152.4
(3) 		67
(-1.8) 		47.1
(-2.9) 		44.8
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 80.6
(0.8)
P 		111.1
(3)
P 		40.1
(-2.2)
P 		50.1
(-1.5)
P 		48.6
(-1.6)
M 		29
(-3)
A 		82
B 146
(3)
P 		120.7
(1.4)
P 		54
(-3)
A 		54.1
(-3)
P 		69.9
(-2)
P 		56.1
(-2.9)
P 		92
C 141.1
(3)
P 		100.8
(0.7)
P 		57.7
(-1.8)
P 		36.4
(-3)
A 		45.5
(-2.5)
M 		50.7
(-2.2)
P 		105
avr 122.6
(3) 		110.9
(2.1) 		50.6
(-2.6) 		46.9
(-2.9) 		54.7
(-2.3) 		45.3
(-3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185147_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5344
Sequence Type Exemplar sequence
Representative Public ID W09G10.2 NCBI
Target Description W09G10.2 /REP_DB=WormBase Gene ID /WP=CE14766 /TR=O16639 /GB=AAB66111.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062168 NCBI Caenorhabditis elegans W09G10.3 (W09G10.3) mRNA, complete cds. 11/11 A 
SNAP00000024967 ENSEMBL cdna:SNAP chromosome:CEL140:II:3525248:3526449:-1 11/11 None
GENEFINDER00000024972 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3525248:3528377:-1 11/11 None
W09G10.3 ENSEMBL cdna:known chromosome:CEL140:II:3525166:3528510:-1 gene:W09G10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3525246-3526448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G10.3
Entrez Gene 173700 Entrez gene
SwissProt O16638 EMBL-EBI
WormBase CE29365 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66110 Hypothetical protein W09G10.3 [Caenorhabditis elegans] ref|NP_494569.1| W09G10.3 [Caenorhabditis elegans] 0.0
blast AAB66110 Hypothetical protein W09G10.3 [Caenorhabditis elegans] ref|NP_494569.1| W09G10.3 [Caenorhabditis elegans] 1.0E-161
blast CAE73811 Hypothetical protein CBG21361 [Caenorhabditis briggsae] 1.0E-141
blast CAE73811 Hypothetical protein CBG21361 [Caenorhabditis briggsae] 1.0E-123
blast AAB66110 Hypothetical protein W09G10.3 [Caenorhabditis elegans] ref|NP_494569.1| W09G10.3 [Caenorhabditis elegans] 1.0E-110
blast CAE73811 Hypothetical protein CBG21361 [Caenorhabditis briggsae] 2.0E-80
blast G88101 protein W09G10.3 [imported] - Caenorhabditis elegans 1.0E-57
Sequence
Target Sequence 
>C. ELEGANS:185147_AT
gactctgcattcattgatcggctctatgcagcaattgtgaagaagaagcagcacccgcag
atcacttttgaggaccttatcctttgtctctgggaactatccgaggacgggaagacttcg
gaaatgggaaattatcatatcaattcatcggctcgggctcaattcgcctttcagctgatg
gatgaggaggggaagggacgagtcgatgagcccggtttctacaagtatacccgttgcgtt
ttcgcattgacagctgtgaacaaaccatgcactgaccaaattatagatgcctcgactatt
ggtttgccagccagtagcatttatcgatctacatcggtggatgacgtcttgaaaccaatg
tctccgttgattgcgaggttttcctcgaaaagattcaaggaactcgatacagaccgcgac
gggttcatcacagtgagagatattgagcgagaacttgaaattcaaaaaaacgaggcgatt
tgtctgaaatcgctgaaagatttttcatttgaagatctgaaaaatgaagaagacgatgat
gatgaagacgatcaggacactaatccactgctatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCTGCATTCATTGATCGGCTCT 82 375 67 Antisense
GAAGAAGAAGCAGCACCCGCAGATC 215 341 105 Antisense
ACCTTATCCTTTGTCTCTGGGAACT 315 85 140 Antisense
TATCATATCAATTCATCGGCTCGGG 171 659 199 Antisense
CTCAATTCGCCTTTCAGCTGATGGA 697 227 224 Antisense
GATGAGCCCGGTTTCTACAAGTATA 699 409 271 Antisense
GTATACCCGTTGCGTTTTCGCATTG 45 439 291 Antisense
AGATGCCTCGACTATTGGTTTGCCA 522 67 351 Antisense
GCCAGCCAGTAGCATTTATCGATCT 162 281 372 Antisense
TACAGACCGCGACGGGTTCATCACA 268 641 474 Antisense
ATCAGGACACTAATCCACTGCTATC 639 27 617 Antisense
Sequence Source Affymetrix Proprietary Database