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[185146_at]

Description Y105C5B.1 /REP_DB=WormBase Gene ID /WP=CE24058 /TR=Q9U318 /GB=CAB60310.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 5.6
(-1.8)
A 		3.5
(-3)
A 		10
(0.8)
A 		13.7
(3)
A 		10
B 7.8
(3)
A 		6.7
(1.4)
A 		3.8
(-3)
A 		6.9
(1.7)
A 		4
C 2.6
(-3)
A 		2.5
(-3)
A 		3.5
(-2.7)
A 		21.7
(3)
A 		19
avr 5.3
(-2.3) 		4.2
(-3) 		5.8
(-2) 		14.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 11.4
(0.4)
A 		4.8
(-3)
A 		4.7
(-3)
A 		16.7
(3)
A 		8.3
(-1.2)
A 		5
(-2.9)
A 		12
B 2
(-2.9)
A 		20.5
(3)
A 		4.7
(-2)
A 		14.8
(1.2)
A 		4.2
(-2.2)
A 		1.7
(-3)
A 		19
C 3.9
(-3)
A 		43.1
(3)
A 		4.2
(-3)
A 		5.1
(-2.8)
A 		4.4
(-2.9)
A 		14.6
(-1.4)
A 		39
avr 5.8
(-2.6) 		22.8
(3) 		4.5
(-3) 		12.2
(-0.5) 		5.6
(-2.6) 		7.1
(-2.1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2
(1)
A 		0.8
(-3)
A 		2.6
(3)
A 		2
(1)
A 		2
B 2.5
(3)
A 		1.6
(-0.4)
A 		0.9
(-3)
A 		1.5
(-0.8)
A 		2
C 0.9
(-2.6)
A 		0.7
(-3)
A 		1.2
(-2)
A 		3.7
(3)
A 		3
avr 1.8
(0.4) 		1
(-3) 		1.6
(-0.4) 		2.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.1
(-0.9)
A 		1.7
(-1.7)
A 		1
(-3)
A 		4.2
(3)
A 		2.5
(-0.2)
A 		1.2
(-2.6)
A 		3
B 0.7
(-2.9)
A 		6.8
(3)
A 		1.1
(-2.5)
A 		3.9
(0.2)
A 		1.7
(-1.9)
A 		0.6
(-3)
A 		6
C 1.4
(-2.8)
A 		13.1
(3)
A 		1.1
(-3)
A 		1
(-3)
A 		1.4
(-2.8)
A 		4.9
(-1.1)
A 		12
avr 1.4
(-2.7) 		7.2
(3) 		1.1
(-3) 		3
(-1.1) 		1.9
(-2.2) 		2.2
(-1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185146_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9084
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.1 NCBI
Target Description Y105C5B.1 /REP_DB=WormBase Gene ID /WP=CE24058 /TR=Q9U318 /GB=CAB60310.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070489
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018422 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15871293:15883457:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070489 8/11 Cross Hyb Matching Probes None
Y105C5B.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15870623-15872189(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26377 hypothetical protein Y105C5B.a - Caenorhabditis elegans 0.0
blast CAB60311 Hypothetical protein Y105C5B.2 [Caenorhabditis elegans] ref|NP_502891.1| Guanylyl CYclase family member (gcy-25) [Caenorhabditis elegans] 0.0
blast CAE57395 Hypothetical protein CBG00346 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001054 EMBL-EBI Guanylate cyclase 9.9E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018422 5 12-34,54-76,89-111,417-439,574-596
Sequence
Target Sequence 
>C. ELEGANS:185146_AT
gggcaatgattcttctgcacactgtgatgattcactattgctgggtttctactcgttgtg
acgcagttcacaataatcgccattattgcagaaatgaagaatacgaaaatcaattttttg
tctataatctcgtatttttatttttcacttttatcactggcgctttctattatcacctgt
tcaaaatcatgaaaaacatggaaaatatagctgcccggagtgctttacttaatcaattta
ttccggtgttttttgtgcagctggtgggtgtgttgcggccgacgtttggcgggttggcgg
ctagtacccgccagatgtcgggcgcacggttaccatttcaaaattttaaaactcgaaata
atttccagatctacgttctattttttgttatatcaatgctcatcagtagaatgtacacga
attctggaattaacaaactgtttgaccacgtaactatttcactaacaaccatattcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCAATGATTCTTCTGCACACTGT 677 493 476 Antisense
GATTCACTATTGCTGGGTTTCTACT 301 429 504 Antisense
GTTTCTACTCGTTGTGACGCAGTTC 205 451 520 Antisense
GACGCAGTTCACAATAATCGCCATT 38 381 535 Antisense
ATTTTTCACTTTTATCACTGGCGCT 164 15 615 Antisense
TCACTGGCGCTTTCTATTATCACCT 557 625 629 Antisense
TATAGCTGCCCGGAGTGCTTTACTT 260 651 681 Antisense
TTCCGGTGTTTTTTGTGCAGCTGGT 397 699 716 Antisense
CTAGTACCCGCCAGATGTCGGGCGC 562 221 776 Antisense
GGGCGCACGGTTACCATTTCAAAAT 708 491 795 Antisense
ATTTCACTAACAACCATATTCCCAA 48 17 931 Antisense
Sequence Source Affymetrix Proprietary Database