[Home] | [Total List]

[185144_at]

Description K11D12.6 /REP_DB=WormBase Gene ID /WP=CE12136 /TR=O44621 /GB=AAB94226.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 9.4
(-3)
A 		14
(-2.5)
A 		32.4
(-0.5)
A 		64
(3)
A 		55
B 9.7
(-3)
A 		17.2
(3)
A 		12.2
(-1)
A 		10
(-2.8)
A 		8
C 8.6
(-2.7)
A 		14.5
(-2.1)
A 		5
(-3)
A 		71.8
(3)
A 		67
avr 9.2
(-3) 		15.2
(-2.1) 		16.5
(-1.9) 		48.6
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 10.8
(-0.6)
A 		5.8
(-3)
A 		18.2
(3)
A 		7.1
(-2.4)
A 		9.3
(-1.3)
A 		7.9
(-2)
A 		12
B 30
(3)
A 		9.1
(-2.1)
A 		8.6
(-2.2)
A 		12
(-1.4)
A 		5.3
(-3)
A 		6.5
(-2.7)
A 		25
C 7.7
(-2.1)
A 		7
(-2.5)
A 		15.9
(3)
A 		6.2
(-3)
A 		11.1
(0)
A 		6.4
(-2.9)
A 		10
avr 16.2
(3) 		7.3
(-2.7) 		14.2
(1.7) 		8.4
(-2) 		8.6
(-1.9) 		6.9
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.4
(-2.6)
A 		3
(-3)
A 		8.5
(2.2)
A 		9.4
(3)
A 		6
B 3.1
(-0.1)
A 		4.2
(3)
A 		2.8
(-1)
A 		2.1
(-3)
A 		2
C 2.8
(-2.4)
A 		4.2
(-1.6)
A 		1.7
(-3)
A 		12.1
(3)
A 		10
avr 3.1
(-3) 		3.8
(-2.1) 		4.3
(-1.5) 		7.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2
(-2.5)
A 		2.1
(-2.2)
A 		4
(3)
A 		1.8
(-3)
A 		2.8
(-0.3)
A 		1.9
(-2.7)
A 		2
B 10.5
(3)
A 		3
(-2.4)
A 		2.1
(-3)
A 		3.2
(-2.2)
A 		2.1
(-3)
A 		2.4
(-2.8)
A 		8
C 2.8
(0.3)
A 		2.1
(-1.1)
A 		4.1
(3)
A 		1.2
(-3)
A 		3.6
(2)
A 		2.2
(-0.9)
A 		3
avr 5.1
(3) 		2.4
(-2.4) 		3.4
(-0.4) 		2.1
(-3) 		2.8
(-1.6) 		2.2
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15278
Sequence Type Exemplar sequence
Representative Public ID K11D12.6 NCBI
Target Description K11D12.6 /REP_DB=WormBase Gene ID /WP=CE12136 /TR=O44621 /GB=AAB94226.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071949 NCBI Caenorhabditis elegans K11D12.6 (K11D12.6) mRNA, complete cds. 11/11 None
SNAP00000023424 ENSEMBL cdna:SNAP chromosome:CEL140:V:5034367:5034971:-1 11/11 None
GENEFINDER00000023443 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5034077:5036277:-1 11/11 None
K11D12.6 ENSEMBL cdna:known chromosome:CEL140:V:5034367:5034971:-1 gene:K11D12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5034366-5034971(-) 98.75 100.0
Public Domain and Genome References
Gene Title
Ensembl K11D12.6
Entrez Gene 187293 Entrez gene
SwissProt O44621 EMBL-EBI
WormBase CE12136 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504350 K11D12.6 [Caenorhabditis elegans] gb|AAB94226.1| Hypothetical protein K11D12.6 [Caenorhabditis elegans] 1.0E-115
blast NP_504351 K11D12.7 [Caenorhabditis elegans] gb|AAK95883.1| Hypothetical protein K11D12.7 [Caenorhabditis elegans] 1.0E-105
blast T32657 hypothetical protein K11D12.7 - Caenorhabditis elegans 1.0E-105
blast NP_504350 K11D12.6 [Caenorhabditis elegans] gb|AAB94226.1| Hypothetical protein K11D12.6 [Caenorhabditis elegans] 1.0E-104
blast CAE64052 Hypothetical protein CBG08651 [Caenorhabditis briggsae] 7.0E-67
blast CAE64053 Hypothetical protein CBG08652 [Caenorhabditis briggsae] 3.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-23
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.2E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-23
Sequence
Target Sequence 
>C. ELEGANS:185144_AT
ttttcggtgcatcagtttcccagaacatttgtgattctccagttgacttgggaaccgcga
aatgttcaaacacatcttcgattcgttaccactatgatcctaccgtgaagcgatgcctgc
cattcggatataccggatgtggaggaaatgagaataactttgccgatccaagaatctgcc
gtcagaggtgtattcctcaagaccaccatgtttgtcctgctaatactccctcaactttga
acacgggaggagccaaaaactgcggaaaggaagaacacgatgaaaaatgtgctgaaccga
ataaaaactactgccaccacggaccaaataacaatggagtttgctgctcactggagtcta
gaaagaaagtggatcaagacagagagctcgtttgtccaaatggaaagaagaagtatgcaa
cattcagaggaggaaaggacagggcgttcattggaaaatcatgtgatcacaaattctgcc
caac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCGGTGCATCAGTTTCCCAGAA 463 665 38 Antisense
TTCTCCAGTTGACTTGGGAACCGCG 252 669 72 Antisense
AACACATCTTCGATTCGTTACCACT 654 133 106 Antisense
ATGATCCTACCGTGAAGCGATGCCT 7 47 131 Antisense
CGATGCCTGCCATTCGGATATACCG 399 249 148 Antisense
TTTGCCGATCCAAGAATCTGCCGTC 59 669 196 Antisense
TCAAGACCACCATGTTTGTCCTGCT 208 633 234 Antisense
TGCTAATACTCCCTCAACTTTGAAC 400 579 255 Antisense
TACTGCCACCACGGACCAAATAACA 441 645 346 Antisense
AGTTTGCTGCTCACTGGAGTCTAGA 256 63 375 Antisense
CATGTGATCACAAATTCTGCCCAAC 666 209 497 Antisense
Sequence Source Affymetrix Proprietary Database