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[185141_at]

Description W09G10.6 /REP_DB=WormBase Gene ID /WP=CE24045 /TR=O16642 /GB=AAF02173.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 11.8
(-2.6)
A 		53.9
(3)
A 		19
(-1.7)
A 		9.1
(-3)
A 		45
B 8.8
(-3)
A 		49.5
(3)
A 		30.9
(0.3)
A 		9.9
(-2.8)
A 		41
C 8.2
(-3)
A 		16.4
(-0.8)
A 		30.2
(3)
A 		11.9
(-2)
A 		22
avr 9.6
(-3) 		39.9
(3) 		26.7
(0.4) 		10.3
(-2.9) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 17.3
(-1.2)
A 		3.9
(-3)
A 		6.3
(-2.7)
A 		6.4
(-2.7)
A 		49.1
(3)
A 		7.4
(-2.5)
A 		45
B 12.2
(-2)
A 		12.8
(-1.9)
A 		42.2
(3)
A 		10.4
(-2.3)
A 		20.4
(-0.6)
A 		6
(-3)
A 		36
C 7.6
(-2.1)
A 		13.9
(-0.8)
A 		3.5
(-2.9)
A 		33.1
(3)
A 		8
(-2)
A 		3.1
(-3)
A 		30
avr 12.4
(-1) 		10.2
(-1.6) 		17.3
(0.5) 		16.6
(0.3) 		25.8
(3) 		5.5
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.3
(-1.3)
A 		11.7
(3)
A 		5
(-0.9)
A 		1.3
(-3)
A 		10
B 2.8
(-2.6)
A 		12.2
(3)
A 		7.1
(-0)
A 		2.1
(-3)
A 		10
C 2.7
(-2.5)
A 		4.7
(-1.1)
A 		10.5
(3)
A 		2
(-3)
A 		9
avr 3.3
(-1.8) 		9.5
(3) 		7.5
(1.4) 		1.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.2
(-2.2)
A 		1.4
(-3)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		14.8
(3)
A 		1.8
(-2.8)
A 		13
B 4.2
(-1.5)
A 		4.3
(-1.4)
A 		10.2
(3)
A 		2.8
(-2.6)
A 		8.3
(1.6)
A 		2.2
(-3)
A 		8
C 2.8
(-1)
A 		4.3
(0.5)
A 		0.9
(-3)
A 		6.7
(3)
A 		2.6
(-1.2)
A 		1
(-2.9)
A 		6
avr 3.4
(-1.5) 		3.3
(-1.6) 		4.2
(-0.8) 		3.7
(-1.3) 		8.6
(3) 		1.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4784
Sequence Type Exemplar sequence
Representative Public ID W09G10.6 NCBI
Target Description W09G10.6 /REP_DB=WormBase Gene ID /WP=CE24045 /TR=O16642 /GB=AAF02173.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062165 NCBI Caenorhabditis elegans W09G10.6 (W09G10.6) mRNA, complete cds. 11/11 None
SNAP00000024963 ENSEMBL cdna:SNAP chromosome:CEL140:II:3516528:3518463:1 10/11 None
GENEFINDER00000024973 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3516633:3520314:1 10/11 None
W09G10.6 ENSEMBL cdna:known chromosome:CEL140:II:3516456:3518848:1 gene:W09G10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3516454-3518847(+) 99.36 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G10.6
Entrez Gene 173697 Entrez gene
SwissProt O16642 EMBL-EBI
WormBase CE24045 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF02173 Hypothetical protein W09G10.6 [Caenorhabditis elegans] ref|NP_494566.1| W09G10.6 [Caenorhabditis elegans] 0.0
blast CAE73802 Hypothetical protein CBG21352 [Caenorhabditis briggsae] 8.0E-64
blast AAB66113 Hypothetical protein W09G10.5 [Caenorhabditis elegans] ref|NP_494567.1| W09G10.5 [Caenorhabditis elegans] 3.0E-58
blast CAE70947 Hypothetical protein CBG17757 [Caenorhabditis briggsae] 7.0E-55
blast CAE73802 Hypothetical protein CBG21352 [Caenorhabditis briggsae] 7.0E-52
Sequence
Target Sequence 
>C. ELEGANS:185141_AT
acttaccggcgaagcttgctcgaaaaaggagcaagggaactgtgaagctggctggaagag
cttcctgagaccatctggggaatggtgtatgaagattttctacgagaactcgattaccca
accatcggcagaaaatcgttgtcaggctcaaggagctacactttctgggcttcagaacca
aattgaatcattctatattacatacactgtatcatcccacatctacccagagtctggaag
catctggattggcttaaaacgtcgcgaagagtgcaaaaacgtaggccgaactcagaattg
cacatcggataactctttcgagtggaccgacaaatctacgaccggcctcgacggaatcga
ttgggacggtggtcagcctgataatgctagaagatactctcaacaatgtgccacgttgac
tgcttcacaccagcggtccgttataggataccatgtcgggcgattggatgatgttggctg
cgaattcgactacatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTACCGGCGAAGCTTGCTCGAAA 187 99 1326 Antisense
GATTACCCAACCATCGGCAGAAAAT 138 427 1437 Antisense
CAAGGAGCTACACTTTCTGGGCTTC 706 181 1474 Antisense
TCCCACATCTACCCAGAGTCTGGAA 85 597 1540 Antisense
GTAGGCCGAACTCAGAATTGCACAT 28 457 1606 Antisense
GGACCGACAAATCTACGACCGGCCT 2 489 1649 Antisense
ACCGGCCTCGACGGAATCGATTGGG 697 87 1666 Antisense
GATTGGGACGGTGGTCAGCCTGATA 500 435 1684 Antisense
AACAATGTGCCACGTTGACTGCTTC 33 135 1727 Antisense
CTTCACACCAGCGGTCCGTTATAGG 468 221 1748 Antisense
GTTGGCTGCGAATTCGACTACATCA 590 435 1798 Antisense
Sequence Source Affymetrix Proprietary Database