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[185138_s_at]

Description ZC239.17 /REP_DB=WormBase Gene ID /WP=CE15142 /TR=P91565 /GB=AAB37952.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 11.3
(-1.7)
A 		19.5
(-0.3)
A 		3.5
(-3)
A 		39.5
(3)
A 		36
B 29.9
(-0.7)
A 		15.4
(-3)
A 		31.7
(-0.4)
A 		52.7
(3)
A 		37
C 24.6
(-0.5)
A 		18.3
(-3)
A 		33.7
(3)
A 		22.7
(-1.3)
A 		15
avr 21.9
(-1.8) 		17.7
(-3) 		23
(-1.5) 		38.3
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 26.7
(-2.5)
A 		20.1
(-3)
A 		97.3
(3)
M 		49.1
(-0.7)
A 		31.9
(-2.1)
A 		33.1
(-2)
A 		77
B 20.1
(-1.5)
A 		5.8
(-3)
A 		35.1
(0)
A 		64
(3)
A 		62.8
(2.9)
M 		42.1
(0.7)
A 		58
C 9.6
(-3)
A 		36.1
(0.2)
A 		58.8
(3)
A 		29.2
(-0.6)
A 		31.7
(-0.3)
A 		44.5
(1.3)
A 		49
avr 18.8
(-3) 		20.7
(-2.7) 		63.7
(3) 		47.4
(0.8) 		42.1
(0.1) 		39.9
(-0.2) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.1
(0.9)
A 		4.2
(1)
A 		0.9
(-3)
A 		5.8
(3)
A 		5
B 9.5
(1.6)
A 		3.8
(-3)
A 		7.3
(-0.2)
A 		11.2
(3)
A 		7
C 8.1
(0.2)
A 		5.3
(-1.9)
A 		11.8
(3)
A 		3.8
(-3)
A 		8
avr 7.2
(3) 		4.4
(-3) 		6.7
(1.9) 		6.9
(2.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4.9
(-3)
A 		7.2
(-2.2)
A 		21.2
(3)
M 		12.5
(-0.2)
A 		9.6
(-1.3)
A 		8
(-1.9)
A 		16
B 7
(-1.7)
A 		1.9
(-3)
A 		8.5
(-1.3)
A 		17
(0.8)
A 		25.5
(3)
M 		15.7
(0.5)
A 		24
C 3.6
(-3)
A 		11
(0.9)
A 		15
(3)
A 		5.9
(-1.8)
A 		10.3
(0.5)
A 		14.9
(2.9)
A 		11
avr 5.2
(-3) 		6.7
(-2.1) 		14.9
(2.9) 		11.8
(1) 		15.1
(3) 		12.9
(1.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185138_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4754
Sequence Type Exemplar sequence
Representative Public ID ZC239.17 NCBI
Target Description ZC239.17 /REP_DB=WormBase Gene ID /WP=CE15142 /TR=P91565 /GB=AAB37952.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062082(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062082 NCBI Caenorhabditis elegans ZC239.17 (ZC239.17) mRNA, complete cds. 9/11 None
ZC239.17 ENSEMBL cdna:known chromosome:CEL140:II:3225477:3225875:-1 gene:ZC239.17 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3225475-3225990(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC239.17
Entrez Gene 173665 Entrez gene
SwissProt Q65ZG7 EMBL-EBI
WormBase CE36254 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAU20826 Hypothetical protein ZC239.17 [Caenorhabditis elegans] ref|NP_494483.2| ZC239.17 [Caenorhabditis elegans] 6.0E-65
blast T25980 hypothetical protein ZC239.17 - Caenorhabditis elegans 2.0E-56
blast AAB37953 Hypothetical protein ZC239.16 [Caenorhabditis elegans] ref|NP_494482.1| ZC239.16 [Caenorhabditis elegans] 4.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.1E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494483.2 1 101-123
ZC239.17 1 101-123
Sequence
Target Sequence 
>C. ELEGANS:185138_S_AT
gaaagtgatattgcgccgaaactcgaaaaatccggatgcatttttattgatcgttccccg
aaacacttcgagttaattctgaacttaatgagagatgggaatctgtggttgcccgaaact
gagaaggaattgagagagttgtgtgcggaagcaaattactatcagatgtttggactgtac
aataagtgcggtgtgaaacttagcactataataaacttccgaatgattcaaaatcaaaaa
ccaataactaaaaataatagttatactcgtttttttgttttttcattaatttttttggta
tttgtgtattacatccctgcactaaaaagcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGTGATATTGCGCCGAAACTCG 150 361 109 Antisense
GCGCCGAAACTCGAAAAATCCGGAT 656 287 121 Antisense
GAAACACTTCGAGTTAATTCTGAAC 637 355 168 Antisense
GAGATGGGAATCTGTGGTTGCCCGA 100 397 200 Antisense
ATCTGTGGTTGCCCGAAACTGAGAA 597 3 209 Antisense
AATTGAGAGAGTTGTGTGCGGAAGC 207 175 236 Antisense
GTGCGGAAGCAAATTACTATCAGAT 403 479 251 Antisense
TGGACTGTACAATAAGTGCGGTGTG 548 545 279 Antisense
TGCGGTGTGAAACTTAGCACTATAA 314 583 295 Antisense
AGCACTATAATAAACTTCCGAATGA 381 77 310 Antisense
ATTACATCCCTGCACTAAAAAGCTA 519 5 416 Antisense
Sequence Source Affymetrix Proprietary Database