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[185137_at]

Description Y25C1A.4 /REP_DB=WormBase Gene ID /WP=CE21471 /TR=Q9TYL4 /GB=AAD12832.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 48.1
(-3)
A 		49.8
(-2.6)
A 		74.3
(3)
M 		69.2
(1.8)
A 		26
B 45.9
(-0.2)
P 		47.4
(-0)
A 		77
(3)
P 		17.8
(-3)
A 		59
C 60.7
(3)
A 		50.3
(0.7)
P 		42.1
(-1.1)
A 		33.5
(-3)
A 		27
avr 51.6
(-0.2) 		49.2
(-0.8) 		64.5
(3) 		40.2
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 39.8
(-1.9)
A 		47.2
(0.6)
A 		45
(-0.2)
A 		36.7
(-3)
A 		46.7
(0.4)
A 		54.4
(3)
M 		18
B 26
(-1.3)
A 		15.2
(-3)
A 		35.4
(0.1)
A 		54.4
(3)
A 		19.2
(-2.4)
A 		44.9
(1.5)
P 		39
C 28.9
(-0.6)
A 		46.4
(3)
P 		43.5
(2.4)
A 		30.9
(-0.2)
A 		23.9
(-1.6)
A 		17.2
(-3)
A 		29
avr 31.6
(-2.1) 		36.3
(0.4) 		41.3
(3) 		40.7
(2.7) 		29.9
(-3) 		38.8
(1.7) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.5
(1.8)
A 		10.8
(-2.5)
A 		19.4
(3)
M 		10.1
(-3)
A 		9
B 14.6
(1.6)
P 		11.7
(0.4)
A 		17.8
(3)
P 		3.8
(-3)
A 		14
C 20.1
(3)
A 		14.4
(0.6)
P 		14.7
(0.8)
A 		5.7
(-3)
A 		14
avr 17.4
(3) 		12.3
(0.2) 		17.3
(2.9) 		6.5
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.3
(-3)
A 		16.8
(3)
A 		9.8
(-1.4)
A 		9.3
(-1.7)
A 		14.1
(1.3)
A 		13.3
(0.8)
M 		10
B 9
(-1)
A 		5.1
(-3)
A 		8.6
(-1.2)
A 		14.4
(1.8)
A 		7.8
(-1.6)
A 		16.7
(3)
P 		12
C 10.7
(0.5)
A 		14.1
(3)
P 		11.1
(0.8)
A 		6.2
(-2.7)
A 		7.7
(-1.6)
A 		5.8
(-3)
A 		8
avr 9
(-3) 		12
(3) 		9.8
(-1.4) 		10
(-1) 		9.9
(-1.2) 		11.9
(2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4760
Sequence Type Exemplar sequence
Representative Public ID Y25C1A.4 NCBI
Target Description Y25C1A.4 /REP_DB=WormBase Gene ID /WP=CE21471 /TR=Q9TYL4 /GB=AAD12832.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062045 NCBI Caenorhabditis elegans Y25C1A.4 (Y25C1A.4) mRNA, complete cds. 11/11 None
SNAP00000041884 ENSEMBL cdna:SNAP chromosome:CEL140:II:3101298:3105900:1 11/11 None
GENEFINDER00000041900 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3102313:3104731:1 11/11 None
Y25C1A.4 ENSEMBL cdna:known chromosome:CEL140:II:3102313:3104731:1 gene:Y25C1A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3102311-3104730(+) 97.44 100.0
Public Domain and Genome References
Gene Title
Ensembl Y25C1A.4
Entrez Gene 189537 Entrez gene
SwissProt Q9TYL4 EMBL-EBI
WormBase CE21471 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494446 Y25C1A.4 [Caenorhabditis elegans] gb|AAD12832.1| Hypothetical protein Y25C1A.4 [Caenorhabditis elegans] 0.0
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 1.0E-127
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 1.0E-125
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 1.0E-122
blast NP_494447 Y25C1A.3 [Caenorhabditis elegans] gb|AAD12833.1| Hypothetical protein Y25C1A.3 [Caenorhabditis elegans] 1.0E-84
Sequence
Target Sequence 
>C. ELEGANS:185137_AT
cctggctggaagttctttgaccgacaaagcggaggatggtgcatgaaagttttcactgga
ttccatgccgctaaagttgatgccgaggctgcttgtaaagatgttggagcaactctttcc
ggccttgaaaacaaggaagaagccattttcattcaaaacgctctccttgcccgaatctca
caagccagtggatctgtgtggattggaattcaaagaaaagctgaatgtttgggaaaagga
cttaccgcttcaggcaccccaacaacttccttcgaatggaccgacaactctgctagtgga
gtcggtggtatggtcttccaggctggacaacctgacaacggagtcacagctttgaaccag
aattgtgcattgcttttggcttcatcgcaaccttacattgatgcacgaggacgtttctat
gcagctactatggaagatgttccttgtgttgccaactttgtcgcatctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGGCTGGAAGTTCTTTGACCGAC 652 265 1099 Antisense
CACTGGATTCCATGCCGCTAAAGTT 536 195 1152 Antisense
AGATGTTGGAGCAACTCTTTCCGGC 125 67 1197 Antisense
GCCATTTTCATTCAAAACGCTCTCC 306 281 1240 Antisense
TGCCCGAATCTCACAAGCCAGTGGA 272 585 1266 Antisense
GGAAAAGGACTTACCGCTTCAGGCA 197 529 1330 Antisense
GACCGACAACTCTGCTAGTGGAGTC 561 381 1377 Antisense
GACAACGGAGTCACAGCTTTGAACC 572 363 1432 Antisense
ACGAGGACGTTTCTATGCAGCTACT 114 93 1503 Antisense
GGAAGATGTTCCTTGTGTTGCCAAC 561 531 1530 Antisense
GTGTTGCCAACTTTGTCGCATCTAA 214 485 1544 Antisense
Sequence Source Affymetrix Proprietary Database