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[185136_at]

Description Y45F10A.7 /REP_DB=WormBase Gene ID /WP=CE18398 /TR=O62456 /GB=CAA16363.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 17.8
(-0.9)
A 		15.1
(-3)
A 		19.2
(0.2)
A 		22.8
(3)
A 		8
B 37.1
(3)
A 		12.9
(-1.5)
A 		5
(-3)
A 		36.9
(3)
A 		32
C 12.4
(-2.7)
A 		13.9
(-2.6)
A 		10.1
(-3)
A 		63.9
(3)
A 		54
avr 22.4
(-0.8) 		14
(-2.5) 		11.4
(-3) 		41.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 17.9
(3)
A 		14.1
(1)
A 		6.7
(-3)
A 		15.8
(1.9)
A 		8.8
(-1.9)
A 		12.5
(0.1)
A 		11
B 22.2
(3)
A 		10.1
(-1.7)
A 		6.6
(-3)
A 		9.4
(-1.9)
A 		12
(-0.9)
A 		8.8
(-2.2)
A 		16
C 11.8
(-2.3)
A 		14
(-1.9)
A 		16.5
(-1.4)
A 		8.4
(-3)
A 		12.7
(-2.1)
A 		38
(3)
A 		30
avr 17.3
(1.5) 		12.7
(-1.3) 		9.9
(-3) 		11.2
(-2.2) 		11.2
(-2.2) 		19.8
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.5
(3)
A 		3.3
(-3)
A 		5
(0.2)
A 		3.3
(-3)
A 		3
B 11.8
(3)
A 		3.2
(-1.9)
A 		1.2
(-3)
A 		7.9
(0.8)
A 		11
C 4.1
(-2.5)
A 		4
(-2.6)
A 		3.5
(-3)
A 		10.8
(3)
A 		7
avr 7.5
(3) 		3.5
(-2.6) 		3.2
(-3) 		7.3
(2.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.3
(0.1)
A 		5
(3)
A 		1.5
(-3)
A 		4
(1.3)
A 		2.7
(-0.9)
A 		3
(-0.4)
A 		4
B 7.7
(3)
A 		3.4
(-1.2)
A 		1.6
(-3)
A 		2.5
(-2.1)
A 		4.9
(0.2)
A 		3.3
(-1.3)
A 		6
C 4.4
(-1.5)
A 		4.3
(-1.6)
A 		4.2
(-1.6)
A 		1.7
(-3)
A 		4.1
(-1.7)
A 		12.7
(3)
A 		11
avr 5.1
(1.2) 		4.2
(-0.2) 		2.4
(-3) 		2.7
(-2.5) 		3.9
(-0.7) 		6.3
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9843
Sequence Type Exemplar sequence
Representative Public ID Y45F10A.7 NCBI
Target Description Y45F10A.7 /REP_DB=WormBase Gene ID /WP=CE18398 /TR=O62456 /GB=CAA16363.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070200 NCBI Caenorhabditis elegans Y45F10A.7 (Y45F10A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000021295 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13492540:13497035:1 11/11 None
Y45F10A.7 ENSEMBL cdna:known chromosome:CEL140:IV:13492540:13497098:1 gene:Y45F10A.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021287 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13492545-13493826(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F10A.7
Entrez Gene 178318 Entrez gene
SwissProt O62456 EMBL-EBI
WormBase CE35664 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258754_AT glutaredoxin-related at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16363 Hypothetical protein Y45F10A.7 [Caenorhabditis elegans] ref|NP_502601.2| Y45F10A.7 [Caenorhabditis elegans] 0.0
blast CAE58595 Hypothetical protein CBG01762 [Caenorhabditis briggsae] 0.0
blast CAE58595 Hypothetical protein CBG01762 [Caenorhabditis briggsae] 1.0E-167
blast T26907 hypothetical protein Y45F10A.8 - Caenorhabditis elegans 1.0E-148
blast T26907 hypothetical protein Y45F10A.8 - Caenorhabditis elegans 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR006869 EMBL-EBI Protein of unknown function DUF547 7.9E-23
Pfam IPR000591 EMBL-EBI Pleckstrin putative G-protein interacting domain 5.9E-8
Pfam IPR006869 EMBL-EBI Protein of unknown function DUF547 7.9E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021295 1 177-199
Sequence
Target Sequence 
>C. ELEGANS:185136_AT
tcttccttcgacgattttgctggccaagtagtgatctacacagaaattggaaattcgaaa
tgtgcaaagggacgagatcttctacatcgagagggcattccatacacagatgtttctctt
gattcatttcctcagcattcacaagaaatattcgatagaacgggaaccgacgtgcttcca
caaatattcttcaacaacatctatattggtcacgaaacggacctggagagagtgatcggt
gagaccaacaagtgggagagcctcgtcgagcacgttcgccgcgaaaagtgcaccaacggc
ggaccgatagttccacacccgatgaacgccatcggtttcgaggaatacgagaccgagaac
aacaataaatgttgtgatgaggtgttgtgggttcccgacgagtacagcaaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCTTCGACGATTTTGCTGGCC 116 619 40 Antisense
GGGACGAGATCTTCTACATCGAGAG 311 495 108 Antisense
GATGTTTCTCTTGATTCATTTCCTC 59 411 148 Antisense
ATTCATTTCCTCAGCATTCACAAGA 603 11 161 Antisense
TAGAACGGGAACCGACGTGCTTCCA 447 649 195 Antisense
ACAAGTGGGAGAGCCTCGTCGAGCA 375 113 287 Antisense
GCACCAACGGCGGACCGATAGTTCC 186 315 329 Antisense
CGATAGTTCCACACCCGATGAACGC 454 245 344 Antisense
GATGAACGCCATCGGTTTCGAGGAA 398 409 360 Antisense
GTGATGAGGTGTTGTGGGTTCCCGA 485 483 413 Antisense
GGTTCCCGACGAGTACAGCAAACTG 351 507 429 Antisense
Sequence Source Affymetrix Proprietary Database