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[185135_at]

Description ZC239.15 /REP_DB=WormBase Gene ID /WP=CE15138 /TR=P91563 /GB=AAB37955.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 16
(-2.1)
A 		61.1
(3)
A 		8.3
(-3)
A 		51.4
(1.9)
A 		53
B 14
(-3)
A 		15.7
(-2.7)
A 		33.7
(-0.1)
A 		54.5
(3)
A 		41
C 54
(-1.7)
A 		48.6
(-2.4)
A 		44.3
(-3)
A 		87.5
(3)
A 		43
avr 28
(-3) 		41.8
(-0.7) 		28.8
(-2.9) 		64.5
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 25.6
(-0.9)
A 		36.7
(0.1)
A 		40
(0.4)
A 		67.6
(3)
A 		22.5
(-1.2)
A 		3.7
(-3)
A 		64
B 31.6
(-0.2)
A 		14.2
(-2)
A 		64.3
(3)
P 		7.3
(-2.6)
A 		3.6
(-3)
A 		20.8
(-1.3)
A 		61
C 3.6
(-3)
A 		53.7
(1.8)
A 		34
(-0.1)
A 		66.6
(3)
A 		7.9
(-2.6)
A 		3.4
(-3)
A 		63
avr 20.3
(-1.3) 		34.9
(1.1) 		46.1
(2.8) 		47.2
(3) 		11.3
(-2.7) 		9.3
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.8
(-1.1)
A 		13.3
(3)
A 		2.2
(-3)
A 		7.5
(-0.1)
A 		11
B 4.5
(-2.5)
A 		3.9
(-3)
A 		7.8
(0)
A 		11.6
(3)
A 		8
C 17.9
(3)
A 		14
(-3)
A 		15.4
(-0.8)
A 		14.8
(-1.8)
A 		4
avr 9.4
(-1.1) 		10.4
(1.1) 		8.5
(-3) 		11.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.7
(-1.6)
A 		13
(1.5)
A 		8.7
(-0.1)
A 		17.2
(3)
A 		6.8
(-0.8)
A 		0.9
(-3)
A 		16
B 11
(1)
A 		4.7
(-1.6)
A 		15.6
(3)
P 		1.9
(-2.8)
A 		1.5
(-3)
A 		7.8
(-0.3)
A 		14
C 1.3
(-3)
A 		16.4
(3)
A 		8.7
(-0)
A 		13.4
(1.8)
A 		2.5
(-2.5)
A 		1.2
(-3)
A 		15
avr 5.7
(-1.2) 		11.4
(3) 		11
(2.7) 		10.8
(2.6) 		3.6
(-2.8) 		3.3
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4376
Sequence Type Exemplar sequence
Representative Public ID ZC239.15 NCBI
Target Description ZC239.15 /REP_DB=WormBase Gene ID /WP=CE15138 /TR=P91563 /GB=AAB37955.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062080 NCBI Caenorhabditis elegans ZC239.15 (ZC239.15) mRNA, complete cds. 11/11 None
SNAP00000024299 ENSEMBL cdna:SNAP chromosome:CEL140:II:3223540:3225049:-1 11/11 None
GENEFINDER00000024308 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3223540:3225280:-1 11/11 None
ZC239.15 ENSEMBL cdna:known chromosome:CEL140:II:3223540:3224638:-1 gene:ZC239.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3223538-3224637(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC239.15
Entrez Gene 191125 Entrez gene
SwissProt P91563 EMBL-EBI
WormBase CE15138 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37955 Hypothetical protein ZC239.15 [Caenorhabditis elegans] ref|NP_494481.1| ZC239.15 [Caenorhabditis elegans] 1.0E-133
blast NP_494315 F22E5.8 [Caenorhabditis elegans] gb|AAB66174.2| Hypothetical protein F22E5.8 [Caenorhabditis elegans] 7.0E-94
blast AAB37955 Hypothetical protein ZC239.15 [Caenorhabditis elegans] ref|NP_494481.1| ZC239.15 [Caenorhabditis elegans] 6.0E-84
blast AAB37955 Hypothetical protein ZC239.15 [Caenorhabditis elegans] ref|NP_494481.1| ZC239.15 [Caenorhabditis elegans] 1.0E-83
blast NP_494315 F22E5.8 [Caenorhabditis elegans] gb|AAB66174.2| Hypothetical protein F22E5.8 [Caenorhabditis elegans] 6.0E-65
blast NP_494315 F22E5.8 [Caenorhabditis elegans] gb|AAB66174.2| Hypothetical protein F22E5.8 [Caenorhabditis elegans] 1.0E-64
blast AAB37956 Hypothetical protein ZC239.14 [Caenorhabditis elegans] ref|NP_494479.1| ZC239.14 [Caenorhabditis elegans] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 4.0E-41
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 2.5E-8
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.5E-23
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.5E-42
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.5E-23
Sequence
Target Sequence 
>C. ELEGANS:185135_AT
atactgaactttatgcgagacggcgacgtggttctacccaattgtgaattgaaactgaag
gagctgctagtagaagctcaattctatttgctcgacggactcattgagttgtgcaattca
aagattgagcttgttgaagctccaaagataaaacttcgatttattgaaagcgatgaacaa
tttcttcaaattcttgctgttcaacagaagccaatgctcataattgaattttgcatggtt
gggaatgatatgtcgattccctataactttaatctttacgagttcatggaaaagtattca
catcagttcgatatttattttcgtaagttttttgtacattatcctcataaaatagtcaat
tcagagcgattgagtgaagacgaaccttctcgcaaatggaaagcaaggataaaatggaaa
cctactgagaatggatattacagtcaatttccacacaatcttcgaattaatcgaggtgga
cggataatacgggatgcaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTGAACTTTATGCGAGACGGCG 207 19 184 Antisense
TTATGCGAGACGGCGACGTGGTTCT 436 681 194 Antisense
ATTCTATTTGCTCGACGGACTCATT 607 9 264 Antisense
GATATGTCGATTCCCTATAACTTTA 323 425 430 Antisense
CTTTAATCTTTACGAGTTCATGGAA 240 221 450 Antisense
GAAAAGTATTCACATCAGTTCGATA 140 353 472 Antisense
GAGTGAAGACGAACCTTCTCGCAAA 508 401 555 Antisense
GAACCTTCTCGCAAATGGAAAGCAA 534 345 565 Antisense
GATATTACAGTCAATTTCCACACAA 438 427 617 Antisense
ATTTCCACACAATCTTCGAATTAAT 419 17 630 Antisense
GGACGGATAATACGGGATGCAACAT 178 525 661 Antisense
Sequence Source Affymetrix Proprietary Database