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[185134_at] 7TM chemoreceptor, srx family

Description T24E12.4 /REP_DB=WormBase Gene ID /WP=CE17262 /TR=O44877 /GB=AAB95042.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 39      6grp_cgc > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 72.4
(3)
P 		36.8
(-1.5)
A 		25
(-3)
A 		40.1
(-1.1)
A 		47
B 30.5
(-3)
A 		32.6
(-2.3)
A 		49.3
(3)
A 		35.8
(-1.3)
A 		19
C 90
(3)
P 		13.7
(-3)
A 		17.6
(-2.7)
A 		39.5
(-1)
A 		76
avr 64.3
(3) 		27.7
(-3) 		30.6
(-2.5) 		38.5
(-1.2) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 65.3
(3)
A 		29.9
(-1.9)
P 		59.5
(2.2)
A 		21.9
(-3)
A 		60.3
(2.3)
A 		33.2
(-1.4)
A 		43
B 57.1
(3)
A 		41.9
(-0.3)
A 		42.8
(-0.1)
A 		47.4
(0.9)
A 		29.7
(-3)
A 		47.6
(0.9)
P 		27
C 12.8
(-3)
A 		48.2
(1.6)
A 		25.7
(-1.3)
A 		59.3
(3)
P 		34.6
(-0.2)
A 		25.1
(-1.4)
A 		47
avr 45.1
(3) 		40
(-0.1) 		42.7
(1.5) 		42.9
(1.7) 		41.5
(0.8) 		35.3
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 26.3
(3)
P 		8
(-2.4)
A 		6.5
(-2.8)
A 		5.9
(-3)
A 		20
B 9.7
(0.3)
A 		8
(-2.4)
A 		11.4
(3)
A 		7.6
(-3)
A 		4
C 29.8
(3)
P 		3.9
(-3)
A 		6.1
(-2.5)
A 		6.7
(-2.4)
A 		26
avr 21.9
(3) 		6.6
(-3) 		8
(-2.5) 		6.7
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 12
(0)
A 		10.6
(-0.6)
P 		13
(0.5)
A 		5.6
(-3)
A 		18.2
(3)
A 		8.1
(-1.8)
A 		13
B 19.9
(3)
A 		13.9
(-0.8)
A 		10.4
(-3)
A 		12.6
(-1.6)
A 		12.1
(-1.9)
A 		17.7
(1.6)
P 		10
C 4.8
(-3)
A 		14.7
(3)
A 		6.5
(-2)
A 		11.9
(1.3)
P 		11.2
(0.9)
A 		8.4
(-0.8)
A 		10
avr 12.2
(0.5) 		13.1
(1.9) 		10
(-3) 		10
(-3) 		13.8
(3) 		11.4
(-0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185134_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4621
Sequence Type Exemplar sequence
Representative Public ID T24E12.4 NCBI
Target Description T24E12.4 /REP_DB=WormBase Gene ID /WP=CE17262 /TR=O44877 /GB=AAB95042.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062241 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-111) (srx-111) mRNA, complete cds. 11/11 None
T24E12.4 ENSEMBL cdna:known chromosome:CEL140:II:3757793:3759246:1 gene:T24E12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005567 2/11 Cross Hyb Matching Probes None
GENEFINDER00000005584 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3757791-3759245(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-111
Ensembl T24E12.4
Entrez Gene 188863 Entrez gene
SwissProt O44877 EMBL-EBI
WormBase CE35624 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95042 Serpentine receptor, class x protein 111 [Caenorhabditis elegans] ref|NP_494642.2| Serpentine Receptor, class X family member (srx-111) [Caenorhabditis elegans] 1.0E-165
blast CAE63382 Hypothetical protein CBG07797 [Caenorhabditis briggsae] 6.0E-87
blast AAB96691 Serpentine receptor, class x protein 110 [Caenorhabditis elegans] ref|NP_494624.1| Serpentine Receptor, class X family member (srx-110) [Caenorhabditis elegans] 1.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494642.2 5 10-31,52-74,123-145,177-199,253-275
T24E12.4 5 10-31,52-74,123-145,177-199,253-275
Sequence
Target Sequence 
>C. ELEGANS:185134_AT
atgcccaactgggacccgaattgctgaataggtatcttaaccaggcaattgcttatggtc
tatattgtcaagaatcctgccttatccgattcagccatcaaagccttacctggatgcacg
atgaatgcccatattttatacattacatcttgcaaagtgattttctattcctagtacttc
cactagcagtattttcaaatgttatgaatgttttcatagctatcaagcttttcctatcgt
cgaaaacccaaaacctctccaccgaatcatgccgtcacagacaaaaaaccttgattcgat
tatttatccaaaattgctttgaagactgggtctacgtactagacacagttaatagcttat
tctttcggaatactgcaaaccatcctttcctgatctttatagtcacccttggctctaatt
tgttcacgcagcttgctgatggattagtcatgtatgtatcaaattatcagagaaatggaa
agcggcgagtcaattctgcgaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCCAACTGGGACCCGAATTGCT 653 39 224 Antisense
TTGTCAAGAATCCTGCCTTATCCGA 547 707 288 Antisense
TATCCGATTCAGCCATCAAAGCCTT 335 657 306 Antisense
CAAAGCCTTACCTGGATGCACGATG 5 193 322 Antisense
GATTTTCTATTCCTAGTACTTCCAC 223 425 382 Antisense
CTATCAAGCTTTTCCTATCGTCGAA 637 223 443 Antisense
GGAATACTGCAAACCATCCTTTCCT 445 533 590 Antisense
TCCTGATCTTTATAGTCACCCTTGG 117 595 611 Antisense
TCACCCTTGGCTCTAATTTGTTCAC 468 621 626 Antisense
AATTTGTTCACGCAGCTTGCTGATG 154 175 640 Antisense
AGCGGCGAGTCAATTCTGCGAAAGT 298 79 704 Antisense
Sequence Source Affymetrix Proprietary Database