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[185133_at]

Description C49D10.8 /REP_DB=WormBase Gene ID /WP=CE08849 /TR=O16602 /GB=AAC71181.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 2.3
(-1.6)
A 		1.4
(-3)
A 		4.1
(1.2)
A 		5.3
(3)
A 		4
B 26.6
(0.7)
A 		8.1
(-2.2)
A 		2.8
(-3)
A 		41.3
(3)
A 		39
C 39.9
(3)
A 		4.2
(-2.6)
A 		1.8
(-3)
A 		33.1
(1.9)
A 		38
avr 22.9
(2.1) 		4.6
(-2.6) 		2.9
(-3) 		26.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 27.9
(3)
A 		9.8
(-1.1)
A 		1.4
(-3)
A 		2.1
(-2.8)
A 		2.2
(-2.8)
A 		2.3
(-2.8)
A 		27
B 3.2
(-2.5)
A 		20.5
(3)
A 		15.5
(1.4)
A 		3.1
(-2.5)
A 		3
(-2.6)
A 		1.6
(-3)
A 		19
C 2.3
(-3)
A 		5.3
(1.7)
A 		2.3
(-3)
A 		6.1
(3)
A 		2.6
(-2.5)
A 		4.1
(-0.2)
A 		4
avr 11.1
(2.5) 		11.9
(3) 		6.4
(-0.5) 		3.8
(-2.2) 		2.6
(-3) 		2.7
(-2.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.8
(0.8)
A 		0.3
(-3)
A 		1.1
(3)
A 		0.8
(0.8)
A 		1
B 8.5
(2.8)
A 		2
(-2)
A 		0.7
(-3)
A 		8.8
(3)
A 		8
C 13.2
(3)
A 		1.2
(-2.7)
A 		0.6
(-3)
A 		5.6
(-0.6)
A 		13
avr 7.5
(3) 		1.2
(-2.6) 		0.8
(-3) 		5.1
(0.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.1
(3)
A 		3.5
(1)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		0.7
(-2.5)
A 		0.6
(-2.6)
A 		5
B 1.1
(-2.5)
A 		6.8
(3)
A 		3.8
(0.1)
A 		0.8
(-2.8)
A 		1.2
(-2.4)
A 		0.6
(-3)
A 		6
C 0.8
(-1.8)
A 		1.6
(3)
A 		0.6
(-3)
A 		1.2
(0.6)
A 		0.8
(-1.8)
A 		1.4
(1.8)
A 		1
avr 2.3
(-0.2) 		4
(3) 		1.6
(-1.5) 		0.8
(-3) 		0.9
(-2.8) 		0.9
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185133_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4296
Sequence Type Exemplar sequence
Representative Public ID C49D10.8 NCBI
Target Description C49D10.8 /REP_DB=WormBase Gene ID /WP=CE08849 /TR=O16602 /GB=AAC71181.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062273 NCBI Caenorhabditis elegans C49D10.8 (C49D10.8) mRNA, complete cds. 11/11 None
SNAP00000008438 ENSEMBL cdna:SNAP chromosome:CEL140:II:3858135:3860919:-1 11/11 None
GENEFINDER00000008447 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3858135:3860919:-1 11/11 None
C49D10.8 ENSEMBL cdna:known chromosome:CEL140:II:3858135:3860919:-1 gene:C49D10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3858133-3860918(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49D10.8
Entrez Gene 183610 Entrez gene
SwissProt O16602 EMBL-EBI
WormBase CE08849 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71181 Hypothetical protein C49D10.8 [Caenorhabditis elegans] ref|NP_494674.1| C49D10.8 [Caenorhabditis elegans] 0.0
blast AAB95169 Hypothetical protein F37C4.3 [Caenorhabditis elegans] ref|NP_500431.1| F37C4.3 [Caenorhabditis elegans] 0.0
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 0.0
blast CAE65676 Hypothetical protein CBG10742 [Caenorhabditis briggsae] 0.0
blast AAB95167 Hypothetical protein F37C4.1 [Caenorhabditis elegans] ref|NP_500433.1| F37C4.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.9E-82
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.5E-34
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494674.1 10 12-29,33-55,78-97,137-159,171-193,197-214,246-268,283-305,318-340,350-367
C49D10.8 10 12-29,33-55,78-97,137-159,171-193,197-214,246-268,283-305,318-340,350-367
SNAP00000008438 8 12-29,33-55,78-97,139-161,168-185,195-217,224-246,256-273
GENEFINDER00000008447 10 12-29,33-55,78-97,137-159,171-193,197-214,246-268,283-305,318-340,350-367
Sequence
Target Sequence 
>C. ELEGANS:185133_AT
gaaaagcatcttacaaggcgccgcatttggctgtgaagctctatatcctagcatgaaaaa
gccagaatgtatggacaattttacgcaatttgcggagcatctggccgacgaacaaccgga
ttatggatttattttcacacgacacatgacaattggagacccgttatctcaggaaccgga
aagtttcgatgaagatcctatttatcaaattatgaaagctcagatgtttaaatttgtctc
gaatatcaaacataagctttacattcttgatgcaattccaagggttcaagtaggtgtcgc
atcgagagtggcaacgatgatgaaagaaggtagcagcccaaaaagtattgataacgcctt
ggtggacacaaagggctacgagttggcaagaaaacgacatgcacaactcgtggaagactg
caacggaaaatgtgttctcgttgattatgctccagagttttacaatcactccagtggaac
tttccgatatttcgacaggaatgggttttcttacatgacgttcggcaatcacctctcacc
gtacggagttgaacggattcggcacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGCATCTTACAAGGCGCCGCA 650 353 1404 Antisense
AGGCGCCGCATTTGGCTGTGAAGCT 4 55 1419 Antisense
GGCTGTGAAGCTCTATATCCTAGCA 581 539 1432 Antisense
TTTGCGGAGCATCTGGCCGACGAAC 285 669 1492 Antisense
TGGAGACCCGTTATCTCAGGAACCG 540 549 1557 Antisense
GGGTTCAAGTAGGTGTCGCATCGAG 608 495 1685 Antisense
TGTGTTCTCGTTGATTATGCTCCAG 641 555 1834 Antisense
CAATCACTCCAGTGGAACTTTCCGA 329 181 1866 Antisense
GGTTTTCTTACATGACGTTCGGCAA 486 505 1907 Antisense
ATCACCTCTCACCGTACGGAGTTGA 294 27 1931 Antisense
CGGAGTTGAACGGATTCGGCACATC 544 241 1947 Antisense
Sequence Source Affymetrix Proprietary Database