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[185132_at]

Description H06H21.7 /REP_DB=WormBase Gene ID /WP=CE17965 /TR=Q9TXU6 /GB=AAK29847.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 332.4
(1.3)
P 		233.9
(-3)
A 		372.9
(3)
P 		294.4
(-0.4)
M 		139
B 307.7
(-3)
P 		375.8
(3)
A 		350.6
(0.8)
A 		367.6
(2.3)
P 		68
C 353.8
(-1.1)
P 		366.6
(-0.3)
A 		326.3
(-3)
P 		414.5
(3)
P 		88
avr 331.3
(-1.9) 		325.4
(-3) 		349.9
(1.4) 		358.8
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 214.6
(-3)
A 		257.6
(-1.2)
A 		232.9
(-2.2)
A 		265.2
(-0.9)
M 		264.9
(-0.9)
P 		359.9
(3)
P 		145
B 211.6
(-2.9)
P 		253.4
(-1.8)
A 		207.2
(-3)
A 		251.9
(-1.8)
P 		262.6
(-1.5)
P 		434.3
(3)
P 		227
C 272.9
(0.9)
P 		303.6
(2.1)
A 		299.4
(1.9)
A 		172.7
(-3)
M 		262.8
(0.5)
P 		327.1
(3)
P 		154
avr 233
(-2.9) 		271.5
(-1.3) 		246.5
(-2.3) 		229.9
(-3) 		263.4
(-1.6) 		373.8
(3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 121
(3)
P 		50.8
(-2.4)
A 		97.5
(1.2)
P 		43.1
(-3)
M 		78
B 98.1
(3)
P 		92.8
(1.4)
A 		81.2
(-2.1)
A 		78.3
(-3)
P 		20
C 117.1
(3)
P 		105.4
(1.5)
A 		113.7
(2.6)
P 		69.9
(-3)
P 		47
avr 112.1
(3) 		83
(-0.6) 		97.5
(1.2) 		63.8
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 39.6
(-3)
A 		91.6
(3)
A 		50.7
(-1.7)
A 		67.3
(0.2)
M 		79.9
(1.7)
P 		87.6
(2.5)
P 		52
B 73.6
(-1.7)
P 		84.3
(-1.2)
A 		50.3
(-3)
A 		66.7
(-2.1)
P 		106.7
(0)
P 		161.9
(3)
P 		112
C 101.1
(2.3)
P 		92.6
(1.6)
A 		76.2
(0.3)
A 		34.7
(-3)
M 		85
(1)
P 		109.5
(3)
P 		75
avr 71.4
(-1.6) 		89.5
(0.1) 		59.1
(-2.7) 		56.2
(-3) 		90.5
(0.2) 		119.7
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11131
Sequence Type Exemplar sequence
Representative Public ID H06H21.7 NCBI
Target Description H06H21.7 /REP_DB=WormBase Gene ID /WP=CE17965 /TR=Q9TXU6 /GB=AAK29847.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068247 NCBI Caenorhabditis elegans H06H21.6 (H06H21.6) mRNA, complete cds. 11/11 None
SNAP00000018254 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4807580:4809954:-1 10/11 None
GENEFINDER00000018260 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4807190:4809954:-1 11/11 None
H06H21.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:4807424:4809964:-1 gene:H06H21.6 11/11 A 
H06H21.6.4 ENSEMBL cdna:known chromosome:CEL140:IV:4807429:4809964:-1 gene:H06H21.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
H06H21.6.2 4/11 Cross Hyb Matching Probes A 
H06H21.6.3 4/11 Cross Hyb Matching Probes A 
H06H21.6.5 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4809479-4809960(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H06H21.6
Entrez Gene 177253 Entrez gene
SwissProt Q8WTJ4 EMBL-EBI
WormBase CE33662 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16852.1.S1_AT similar to UBX domain containing 1 cfa
CANINE_2:CFAAFFX.29101.1.S1_S_AT similar to UBX domain containing 1 cfa
DROSOPHILA_2:1626177_S_AT GDI interacting protein 3 dm
DROSGENOME1:142844_AT GDI interacting protein 3 dm
CHICKEN:GGA.12160.3.S1_A_AT similar to UBX domain containing 1; UBX domain-containing 2; UBX domain-containing 1 gga
HU35KSUBD:RC_W45377_AT UBX domain containing 1 hs
HG-U95C:49749_AT UBX domain containing 1 hs
HG-U133_PLUS_2:223012_AT UBX domain containing 1 hs
HG-U133B:223012_AT UBX domain containing 1 hs
HG-U133_PLUS_2:220757_S_AT UBX domain containing 1 hs
HG-U133A:220757_S_AT UBX domain containing 1 hs
HG-FOCUS:220757_S_AT UBX domain containing 1 hs
HG-U133A_2:220757_S_AT UBX domain containing 1 hs
HU35KSUBA:W79850_AT UBX domain containing 1 hs
HU35KSUBB:RC_W57897_AT UBX domain containing 1 hs
HU35KSUBD:RC_W72263_S_AT UBX domain containing 1 hs
U133_X3P:G13376853_3P_A_AT UBX domain containing 1 hs
U133_X3P:G13160493_3P_AT UBX domain containing 1 hs
HG-U95B:48123_S_AT UBX domain containing 1 hs
MG-U74AV2:97285_F_AT UBX domain containing 1 mm
MG-U74CV2:168944_I_AT UBX domain containing 1 mm
MOE430A:1417557_AT UBX domain containing 1 mm
MOUSE430A_2:1417557_AT UBX domain containing 1 mm
MOUSE430_2:1417557_AT UBX domain containing 1 mm
MU19KSUBA:TC20843_AT UBX domain containing 1, mRNA (cDNA clone MGC:25886 IMAGE:4215883) mm
MU19KSUBA:TC20843_G_AT UBX domain containing 1, mRNA (cDNA clone MGC:25886 IMAGE:4215883) mm
MU19KSUBB:TC34209_AT UBX domain containing 1, mRNA (cDNA clone MGC:25886 IMAGE:4215883) mm
MU19KSUBC:TC35103_AT UBX domain containing 1, mRNA (cDNA clone MGC:25886 IMAGE:4215883) mm
RG-U34B:RC_AI008393_AT similar to UBX domain-containing protein 1 rn
RG-U34B:RC_AI044855_AT similar to UBX domain-containing protein 1 rn
RG-U34C:RC_AI227815_AT similar to UBX domain-containing protein 1 rn
RAE230A:1389260_AT similar to UBX domain-containing protein 1 rn
RAT230_2:1389260_AT similar to UBX domain-containing protein 1 rn
RG-U34A:RC_H31922_AT Similar to UBX domain-containing protein 1 rn
Protein Similarities
Method ID Description E-Value
blast AAL32226 Hypothetical protein H06H21.6 [Caenorhabditis elegans] ref|NP_500648.2| H06H21.6 [Caenorhabditis elegans] 0.0
blast B88678 protein H06H21.6 [imported] - Caenorhabditis elegans 4.0E-56
blast B88678 protein H06H21.6 [imported] - Caenorhabditis elegans 5.0E-56
blast B88678 protein H06H21.6 [imported] - Caenorhabditis elegans 6.0E-56
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000018254 1 59-81
GENEFINDER00000018260 1 59-81
Sequence
Target Sequence 
>C. ELEGANS:185132_AT
gtcgccgagccgacaactgagcagactccgttgagcacaaattcagttgcttatcagagc
tccgacgcgcttccagattcctcagaagcattcggagtagaaaacgtttatcgtgctttg
attatcttctgtgataattattcgttggataaaaaacaagtagctctcggactctttctt
tctattctacttttcatcttctctgttggcactatcattgcgtggaatcgatattcacca
atcattcaggagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCCGAGCCGACAACTGAGCAGA 47 475 28 Antisense
AACTGAGCAGACTCCGTTGAGCACA 342 141 42 Antisense
GACTCCGTTGAGCACAAATTCAGTT 336 373 51 Antisense
TCAGTTGCTTATCAGAGCTCCGACG 657 621 70 Antisense
ACGCGCTTCCAGATTCCTCAGAAGC 98 91 92 Antisense
ATCGTGCTTTGATTATCTTCTGTGA 352 35 137 Antisense
AACAAGTAGCTCTCGGACTCTTTCT 66 135 182 Antisense
TCTTTCTTTCTATTCTACTTTTCAT 676 615 200 Antisense
TCTTCTCTGTTGGCACTATCATTGC 199 617 224 Antisense
GGCACTATCATTGCGTGGAATCGAT 13 535 235 Antisense
GATATTCACCAATCATTCAGGAGTT 208 427 257 Antisense
Sequence Source Affymetrix Proprietary Database