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[185131_at]

Description Y48C3A.16 /REP_DB=WormBase Gene ID /WP=CE22150 /TR=Q9NAF9 /GB=CAB55116.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 01      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 395
1 2 3 4 range
A 207.7
(-3)
A 		221.3
(-2.7)
A 		272.9
(-1.6)
A 		481.6
(3)
A 		274
B 313.4
(-0.6)
A 		156.9
(-3)
A 		241.2
(-1.7)
A 		551.9
(3)
P 		395
C 239.7
(-2.5)
A 		235.9
(-2.6)
A 		227.1
(-3)
A 		373.2
(3)
P 		146
avr 253.6
(-1.9) 		204.7
(-3) 		247.1
(-2) 		468.9
(3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 137
(-3)
A 		189.6
(-0.5)
A 		257.3
(2.7)
A 		194.1
(-0.3)
A 		228.8
(1.3)
A 		263.8
(3)
A 		127
B 273.2
(0.2)
A 		185.9
(-3)
A 		237.1
(-1.1)
A 		212.6
(-2)
A 		219.1
(-1.8)
A 		349.4
(3)
M 		164
C 369.1
(3)
A 		224
(-0.7)
A 		185.7
(-1.7)
A 		136.1
(-3)
A 		209.8
(-1.1)
A 		345.7
(2.4)
M 		233
avr 259.8
(0.4) 		199.8
(-2.2) 		226.7
(-1) 		180.9
(-3) 		219.2
(-1.3) 		319.6
(3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 75.6
(3)
A 		48
(-3)
A 		71.3
(2.1)
A 		70.5
(1.9)
A 		28
B 99.9
(1.7)
A 		38.7
(-3)
A 		55.9
(-1.7)
A 		117.6
(3)
P 		79
C 79.3
(3)
A 		67.8
(-1.2)
A 		79.2
(3)
A 		62.9
(-3)
P 		16
avr 84.9
(3) 		51.5
(-3) 		68.8
(0.1) 		83.7
(2.8) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 25.3
(-3)
A 		67.4
(2.8)
A 		56
(1.2)
A 		49.2
(0.3)
A 		69
(3)
A 		64.2
(2.3)
A 		44
B 95.1
(0.1)
A 		61.9
(-2.5)
A 		57.6
(-2.9)
A 		56.3
(-3)
A 		89
(-0.3)
A 		130.3
(3)
M 		74
C 136.8
(3)
A 		68.4
(-0.8)
A 		47.3
(-1.9)
A 		27.4
(-3)
A 		67.9
(-0.8)
A 		115.7
(1.8)
M 		109
avr 85.7
(1.2) 		65.9
(-0.8) 		53.6
(-2.1) 		44.3
(-3) 		75.3
(0.1) 		103.4
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185131_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3787
Sequence Type Exemplar sequence
Representative Public ID Y48C3A.16 NCBI
Target Description Y48C3A.16 /REP_DB=WormBase Gene ID /WP=CE22150 /TR=Q9NAF9 /GB=CAB55116.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064423 NCBI Caenorhabditis elegans Y48C3A.16 (Y48C3A.16) mRNA, complete cds. 11/11 None
GENEFINDER00000006664 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13402876:13404449:1 11/11 None
Y48C3A.16 ENSEMBL cdna:known chromosome:CEL140:II:13402876:13404525:1 gene:Y48C3A.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13402872-13404446(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48C3A.16
Entrez Gene 174979 Entrez gene
SwissProt Q9NAF9 EMBL-EBI
WormBase CE22150 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261018_AT peptidyl-prolyl cis-trans isomerase PPIC-type family protein at
CANINE:1589354_AT similar to Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4) (Parvulin 14) (Par14) (Peptidyl-prolyl cis/trans isomerase EPVH) (hPar14) cfa
CANINE_2:CFA.12056.1.A1_S_AT similar to Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4) (Parvulin 14) (Par14) (Peptidyl-prolyl cis/trans isomerase EPVH) (hPar14) cfa
CANINE_2:CFAAFFX.9310.1.S1_X_AT similar to Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4) (Parvulin 14) (Par14) (Peptidyl-prolyl cis/trans isomerase EPVH) (hPar14) cfa
DROSOPHILA_2:1633856_AT dm
DROSGENOME1:150570_AT dm
CHICKEN:GGA.7537.1.S1_AT similar to Hypothetical protein MGC75904 gga
HG-U133_PLUS_2:214225_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133A_2:214225_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133A:214225_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133A:204572_S_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133_PLUS_2:204572_S_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133A_2:204572_S_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HU35KSUBB:RC_T65797_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HU35KSUBD:RC_AA418383_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
U133_X3P:G5453901_3P_A_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
U133_X3P:HS.11774.1.S1_3P_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
U133_X3P:HS.11774.0.S1_3P_A_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133A_2:204571_X_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133_PLUS_2:204571_X_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133A:204571_X_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133A_2:214224_S_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-FOCUS:214224_S_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133_PLUS_2:214224_S_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133A:214224_S_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U95AV2:41616_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133_PLUS_2:243226_AT Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U133B:243226_AT Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U95D:76010_I_AT Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
HG-U95D:76012_R_AT Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
U133_X3P:HS.118076.0.A1_3P_AT Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) hs
MOE430B:1428658_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) mm
MOUSE430_2:1428658_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) mm
MG-U74BV2:162558_I_AT protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16853 isomerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55116 Hypothetical protein Y48C3A.16 [Caenorhabditis elegans] ref|NP_496824.1| Y48C3A.16 [Caenorhabditis elegans] 1.0E-52
blast CAE73353 Hypothetical protein CBG20785 [Caenorhabditis briggsae] 4.0E-50
blast NP_001018389 hypothetical protein LOC553574 [Danio rerio] gb|AAH95126.1| Hypothetical protein LOC553574 [Danio rerio] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR000297 EMBL-EBI PpiC-type peptidyl-prolyl cis-trans isomerase 6.7E-21
Sequence
Target Sequence 
>C. ELEGANS:185131_AT
caaaaggaggcgctagcggctccggcaaagacgacggcggtggccagaaaaaagaggcaa
aaggtggtggtacggcagtaaaagttcgtcacattctctgtgagaaacagggaaaagcgt
tggaggctatcgaaaagctcaaatcgggaatgaagttcaacgaggtggccgctcaataca
gtgaggataaggcgagaagtggtggagatcttggatggatgacacgtggcagtatggttg
gaccatttcaggacgccgcatttgccctgtcgaacagctcatgcgacaagccaatctaca
cggaccccccagtcaagacaaagttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAAGGAGGCGCTAGCGGCTCCGG 43 189 32 Antisense
GCTCCGGCAAAGACGACGGCGGTGG 635 283 50 Antisense
GGCAAAAGGTGGTGGTACGGCAGTA 510 523 87 Antisense
AGTAAAAGTTCGTCACATTCTCTGT 691 61 108 Antisense
GTTCAACGAGGTGGCCGCTCAATAC 346 443 186 Antisense
GGATGACACGTGGCAGTATGGTTGG 1 513 248 Antisense
TATGGTTGGACCATTTCAGGACGCC 560 653 264 Antisense
CATTTGCCCTGTCGAACAGCTCATG 449 215 290 Antisense
GAACAGCTCATGCGACAAGCCAATC 156 345 303 Antisense
TGCGACAAGCCAATCTACACGGACC 187 579 313 Antisense
GACCCCCCAGTCAAGACAAAGTTCG 99 379 334 Antisense
Sequence Source Affymetrix Proprietary Database