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[185130_at]

Description K11D12.8 /REP_DB=WormBase Gene ID /WP=CE12140 /TR=O44623 /GB=AAB94228.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 94      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 569
1 2 3 4 range
A 66.6
(-2.7)
A 		46.2
(-3)
A 		44.1
(-3)
A 		560.4
(3)
P 		516
B 70.7
(-2.4)
A 		56.5
(-2.6)
A 		32.9
(-3)
A 		420.3
(3)
P 		387
C 112.1
(-2.2)
P 		58.1
(-2.8)
A 		38.8
(-3)
A 		601.4
(3)
P 		563
avr 83.1
(-2.5) 		53.6
(-2.8) 		38.6
(-3) 		527.4
(3) 		489

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 55.7
(-2.4)
A 		43
(-3)
P 		108.3
(-0.1)
P 		131.7
(0.9)
P 		179.3
(3)
P 		108.7
(-0.1)
P 		136
B 92.9
(-2.7)
P 		87.6
(-3)
P 		97.8
(-2.5)
P 		117.8
(-1.5)
P 		210.4
(3)
P 		146.3
(-0.1)
P 		123
C 118.1
(-1.2)
P 		77.1
(-2.7)
P 		102.3
(-1.8)
P 		68.2
(-3)
P 		236.6
(3)
P 		216
(2.3)
P 		168
avr 88.9
(-2.2) 		69.2
(-3) 		102.8
(-1.6) 		105.9
(-1.4) 		208.8
(3) 		157
(0.8) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 24.2
(-1.8)
A 		10
(-3)
A 		11.5
(-2.9)
A 		82
(3)
P 		72
B 22.5
(-1.9)
A 		14
(-2.5)
A 		7.6
(-3)
A 		89.6
(3)
P 		82
C 37.1
(-1.4)
P 		16.7
(-2.8)
A 		13.5
(-3)
A 		101.4
(3)
P 		88
avr 27.9
(-1.7) 		13.6
(-2.8) 		10.9
(-3) 		91
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 10.3
(-3)
A 		15.3
(-2.3)
P 		23.6
(-1.2)
P 		33.4
(0.2)
P 		54.1
(3)
P 		26.5
(-0.8)
P 		44
B 32.3
(-2.2)
P 		29.2
(-2.5)
P 		23.7
(-3)
P 		31.2
(-2.3)
P 		85.5
(3)
P 		54.6
(0)
P 		62
C 43.8
(-0.1)
P 		23.5
(-2.1)
P 		26
(-1.8)
P 		13.7
(-3)
P 		76.6
(3)
P 		72.3
(2.6)
P 		63
avr 28.8
(-2.3) 		22.7
(-3) 		24.4
(-2.8) 		26.1
(-2.6) 		72.1
(3) 		51.1
(0.4) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15504
Sequence Type Exemplar sequence
Representative Public ID K11D12.8 NCBI
Target Description K11D12.8 /REP_DB=WormBase Gene ID /WP=CE12140 /TR=O44623 /GB=AAB94228.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071952 NCBI Caenorhabditis elegans K11D12.8 (K11D12.8) mRNA, complete cds. 11/11 None
K11D12.8 ENSEMBL cdna:known chromosome:CEL140:V:5039236:5040808:-1 gene:K11D12.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023427 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023434 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5039235-5040808(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K11D12.8
Entrez Gene 187294 Entrez gene
SwissProt O44623 EMBL-EBI
WormBase CE12140 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504353 K11D12.8 [Caenorhabditis elegans] gb|AAB94228.1| Hypothetical protein K11D12.8 [Caenorhabditis elegans] 1.0E-153
blast CAE64056 Hypothetical protein CBG08655 [Caenorhabditis briggsae] 2.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504353.1 3 60-82,230-249,264-286
K11D12.8 3 60-82,230-249,264-286
Sequence
Target Sequence 
>C. ELEGANS:185130_AT
ggaacacttcgagacatcgtatggaacaatgctaatcggcgaagaaggaatgattctcag
agaaatgagacgggaagatctgaaactggaagatctggaactgacaactcgtttggagat
ttgaaagatatttatatgttcccatcgatgacgtttttagagaaaattagaacaaaattc
aagcatttctgcaattttgaaacaaatcccaaacaaaaaaaacataacacgcaattattt
tctcatgataaatcaaacttccagattctttccaatttaacaattggatcaccccgccgc
tcagctacttggcgcctccgccatatgtcgatcgccgtcaagattcatcgcttcccatat
aactttgaaatctcaatatattttttttctcaaactaattttaaggccaattattcattc
tttgtcgtgtttttctatttattatttttcatttttccagtgttgaaaaagccaaaacta
ttgcaagatagaatcatttccattttactattgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACACTTCGAGACATCGTATGGA 325 529 295 Antisense
GTATGGAACAATGCTAATCGGCGAA 51 455 313 Antisense
GGAAGATCTGGAACTGACAACTCGT 379 531 382 Antisense
ATATGTTCCCATCGATGACGTTTTT 71 21 428 Antisense
AACACGCAATTATTTTCTCATGATA 188 137 520 Antisense
CAAACTTCCAGATTCTTTCCAATTT 680 189 548 Antisense
ATGTCGATCGCCGTCAAGATTCATC 658 47 619 Antisense
ATTCATCGCTTCCCATATAACTTTG 540 11 637 Antisense
AAGGCCAATTATTCATTCTTTGTCG 45 163 697 Antisense
TTCTTTGTCGTGTTTTTCTATTTAT 431 691 712 Antisense
GAATCATTTCCATTTTACTATTGCA 32 329 785 Antisense
Sequence Source Affymetrix Proprietary Database