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[185126_at]

Description T10B11.1 /REP_DB=WormBase Gene ID /WP=CE18240 /TR=Q9TZH6 /GB=AAC67465.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 55      6grp_total > 62      4grp_total > 16      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1361
1 2 3 4 range
A 593.8
(-3)
P 		887.4
(-0.3)
P 		1001.3
(0.8)
P 		1241.5
(3)
P 		648
B 703.5
(-3)
P 		976.7
(-1.7)
P 		1051.4
(-1.3)
P 		1955
(3)
P 		1252
C 706
(-3)
P 		957.8
(-1.8)
P 		1043.3
(-1.4)
P 		1951.4
(3)
P 		1245
avr 667.8
(-3) 		940.6
(-1.4) 		1032
(-0.9) 		1716
(3) 		1048

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1447
1 2 3 4 5 6 range
A 1209.4
(-2)
P 		1361.5
(-1.4)
P 		2418.1
(3)
P 		2082.8
(1.6)
P 		1113.7
(-2.4)
P 		971.6
(-3)
P 		1447
B 1166.6
(-3)
P 		1498.1
(-1.2)
P 		2257.6
(3)
P 		1845.7
(0.7)
P 		1829.4
(0.6)
P 		1428.6
(-1.6)
P 		1091
C 1260.6
(-3)
P 		1340.1
(-2.4)
P 		1829.2
(1)
P 		2119.4
(3)
P 		1730.3
(0.3)
P 		1538.6
(-1.1)
P 		859
avr 1212.2
(-3) 		1399.9
(-1.8) 		2168.3
(3) 		2016
(2) 		1557.8
(-0.8) 		1312.9
(-2.4) 		956
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 216.2
(-0.4)
P 		192.6
(-2.2)
P 		261.8
(3)
P 		181.7
(-3)
P 		80
B 224.3
(-3)
P 		241.2
(-2.5)
P 		243.6
(-2.4)
P 		416.6
(3)
P 		192
C 233.7
(-3)
P 		275.4
(-1.1)
P 		363.6
(3)
P 		329
(1.4)
P 		130
avr 224.7
(-3) 		236.4
(-2.2) 		289.7
(1.6) 		309.1
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 520
1 2 3 4 5 6 range
A 222.9
(-3)
P 		484.2
(2.1)
P 		526.6
(3)
P 		528.3
(3)
P 		336.1
(-0.8)
P 		236.5
(-2.7)
P 		305
B 405.9
(-3)
P 		498.6
(-1.4)
P 		548.2
(-0.5)
P 		488.9
(-1.5)
P 		743.2
(3)
P 		532.7
(-0.7)
P 		337
C 467.2
(-0.7)
P 		408.9
(-3)
P 		465.6
(-0.7)
P 		426.2
(-2.3)
P 		559.9
(3)
P 		515.1
(1.2)
P 		151
avr 365.3
(-3) 		463.9
(0.3) 		513.5
(1.9) 		481.1
(0.8) 		546.4
(3) 		428.1
(-0.9) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185126_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2414
Sequence Type Exemplar sequence
Representative Public ID T10B11.1 NCBI
Target Description T10B11.1 /REP_DB=WormBase Gene ID /WP=CE18240 /TR=Q9TZH6 /GB=AAC67465.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059581 NCBI Caenorhabditis elegans T10B11.1 (T10B11.1) mRNA, complete cds. 11/11 None
T10B11.1 ENSEMBL cdna:known chromosome:CEL140:I:6959266:6960081:1 gene:T10B11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021318 8/11 Cross Hyb Matching Probes None
SNAP00000021315 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6959196-6959958(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B11.1
Entrez Gene 188368 Entrez gene
SwissProt Q9TZH6 EMBL-EBI
WormBase CE18240 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1596819_AT similar to pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 cfa
CANINE:1587633_X_AT similar to pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 cfa
CANINE:1583456_S_AT similar to pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 cfa
CANINE_2:CFA.12508.1.A1_AT similar to pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 cfa
CANINE_2:CFA.12607.1.A1_S_AT similar to pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 cfa
CANINE_2:CFA.12607.1.A1_X_AT similar to pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 cfa
CANINE_2:CFAAFFX.21771.1.S1_AT similar to pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 cfa
CANINE_2:CFAAFFX.21771.1.S1_S_AT similar to pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 cfa
CHICKEN:GGA.427.1.S1_AT 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) gga
HUGENEFL:L41559_AT 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) hs
HG-U133A:203557_S_AT 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) hs
HG-U133_PLUS_2:203557_S_AT 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) hs
HG-FOCUS:203557_S_AT 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) hs
HG-U133A_2:203557_S_AT 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) hs
U133_X3P:G4557830_3P_S_AT 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) hs
HG-U95AV2:34352_AT 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) hs
MU11KSUBB:MSA.6611.0_F_AT pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 mm
MG-U74AV2:99056_AT pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 mm
MOE430A:1418713_AT pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 mm
MOUSE430A_2:1418713_AT pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 mm
MOUSE430_2:1418713_AT pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 mm
MU19KSUBC:TC40194_AT Pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1, mRNA (cDNA clone MGC:35787 IMAGE:5052788) mm
RG-U34A:M83740_S_AT pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 rn
RAE230A:1372485_AT pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 rn
RAT230_2:1372485_AT pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 rn
Protein Similarities
Method ID Description E-Value
blast NP_491982 T10B11.1 [Caenorhabditis elegans] gb|AAC67465.1| Hypothetical protein T10B11.1 [Caenorhabditis elegans] pir||T33522 hypothetical protein T10B11.1 - Caenorhabditis elegans 3.0E-92
blast CAE60338 Hypothetical protein CBG03930 [Caenorhabditis briggsae] 1.0E-58
blast Q9TZH6 Putative pterin-4-alpha-carbinolamine dehydratase (PHS) (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD) 6.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR001533 EMBL-EBI Transcriptional coactivator/pterin dehydratase 2.8E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491982.1 1 7-29
T10B11.1 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:185126_AT
atcaatcgctatcagttgcccttgatctgttttctatttacaaatactttttacagacta
ttacccattactgttccttttcttctcaacgcatcttctcattcaatgcattcttcatat
tctcattttcttcaacgtcttcgtacatccgtctcatatctctctgtctctcattttcca
tccacttcatctcatcggttattctcgaccacaatcggtgtgtttgccagaaagaaaatg
cctcttctcaccgaatctgaacgtactgaacaactttcgggcctgaaaactgctggatgg
aaacttgtcgaagggcgtgatgcgattcaaaaggagttccatttcaaggattttaatgag
gcatttggtttcatgactcgcgtcggattgaaagcggaaaaaatggatcatcatccagaa
tggttcaacgtttacaataaggtggatatcactttatcaacccacgattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATCGCTATCAGTTGCCCTTGA 291 27 16 Antisense
TTGCCCTTGATCTGTTTTCTATTTA 383 703 31 Antisense
AGACTATTACCCATTACTGTTCCTT 263 57 70 Antisense
TCTCAACGCATCTTCTCATTCAATG 288 613 99 Antisense
CACTTCATCTCATCGGTTATTCTCG 378 197 198 Antisense
GACCACAATCGGTGTGTTTGCCAGA 659 383 222 Antisense
CCTCTTCTCACCGAATCTGAACGTA 532 267 256 Antisense
ACGTACTGAACAACTTTCGGGCCTG 380 75 276 Antisense
TTCGGGCCTGAAAACTGCTGGATGG 61 695 291 Antisense
AGGCATTTGGTTTCATGACTCGCGT 92 55 374 Antisense
ATATCACTTTATCAACCCACGATTG 335 19 461 Antisense
Sequence Source Affymetrix Proprietary Database