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[185125_at]

Description Y116A8C.8 /REP_DB=WormBase Gene ID /WP=CE23319 /TR=Q9U2T4 /GB=CAB55143.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 41      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 72.1
(-3)
A 		175.8
(3)
A 		113.6
(-0.6)
A 		126.2
(0.1)
A 		104
B 63
(-3)
A 		93.8
(-0.9)
A 		150.5
(3)
A 		117.5
(0.7)
A 		88
C 48.2
(-2.2)
A 		152.4
(3)
A 		93.7
(0.1)
A 		32.3
(-3)
A 		120
avr 61.1
(-3) 		140.7
(3) 		119.3
(1.4) 		92
(-0.7) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 67.1
(-0.2)
A 		52.9
(-0.9)
A 		13.5
(-3)
A 		73.4
(0.2)
A 		126.6
(3)
A 		95.6
(1.4)
A 		113
B 107
(3)
A 		68
(-0.7)
A 		80.6
(0.5)
A 		89.5
(1.3)
A 		56.1
(-1.8)
A 		43.4
(-3)
A 		64
C 64.4
(0.5)
A 		103.4
(3)
A 		61.3
(0.3)
A 		8.3
(-3)
A 		20.4
(-2.2)
A 		81.7
(1.6)
A 		95
avr 79.5
(3) 		74.8
(2) 		51.8
(-3) 		57.1
(-1.9) 		67.7
(0.4) 		73.6
(1.7) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 26.3
(-0.6)
A 		38.2
(3)
A 		29.7
(0.4)
A 		18.5
(-3)
A 		20
B 20.1
(-3)
A 		23.2
(-1.7)
A 		34.9
(3)
A 		25
(-1)
A 		15
C 16
(-1.3)
A 		43.8
(3)
A 		32.7
(1.3)
A 		5.4
(-3)
A 		38
avr 20.8
(-1.6) 		35.1
(3) 		32.4
(2.1) 		16.3
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 12.4
(-1.4)
A 		18.8
(-0.3)
A 		2.9
(-3)
A 		18.6
(-0.3)
A 		38.2
(3)
A 		23.3
(0.5)
A 		35
B 37.2
(3)
A 		22.6
(-1.2)
A 		19.6
(-2)
A 		23.7
(-0.9)
A 		22.8
(-1.1)
A 		16.2
(-3)
A 		21
C 23.9
(1.5)
A 		31.6
(3)
A 		15.6
(-0.2)
A 		1.7
(-3)
A 		6.6
(-2)
A 		27.3
(2.1)
A 		30
avr 24.5
(3) 		24.3
(2.9) 		12.7
(-3) 		14.7
(-2) 		22.5
(2) 		22.3
(1.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185125_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9492
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.8 NCBI
Target Description Y116A8C.8 /REP_DB=WormBase Gene ID /WP=CE23319 /TR=Q9U2T4 /GB=CAB55143.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070606 NCBI Caenorhabditis elegans Y116A8C.8 (Y116A8C.8) mRNA, complete cds. 11/11 None
GENEFINDER00000004180 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16930821:16933070:1 11/11 None
Y116A8C.8 ENSEMBL cdna:known chromosome:CEL140:IV:16930821:16933070:1 gene:Y116A8C.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004077 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16930826-16933076(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.8
Entrez Gene 190996 Entrez gene
SwissProt Q9U2T4 EMBL-EBI
WormBase CE23319 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55143 Hypothetical protein Y116A8C.8 [Caenorhabditis elegans] ref|NP_503007.1| Y116A8C.8 [Caenorhabditis elegans] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:185125_AT
cctgctcaatactcacttggtgctgacaacaccccaaaggtaggcgagaacgtgaagaag
atgtcgactcaagctcataaggattatatatctggattgaattcacatcgtcagctcgtt
gcaaataatttgtcaatcgccaacatgcacgagcttgtaagttttacaaaaacgtcaaat
tcacagctgtccttgaaaaaggcctgcttagcagtagtggctaaacggggagaaattgca
gagtttcgacgatggcctcgcaaatcttgtctcggacatgacatgcaacgactacgcgag
acatatccaaatgagtatggaaacatcggagatggaaaaaatattcagaataaagacatt
gacgccctcatgataatcaaccctacccaaactcgggtgggatgtgcgaatgctaaatgt
gaccattatgagactgtgcattgtatatttggaccaaaggacaaaataacagcggacgac
ttcaagattggaagcgccggcacggcgtgcccggtgggaagacggccaagaatttgtgca
agttctccgaggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGCTCAATACTCACTTGGTGCTG 376 267 160 Antisense
CTTGGTGCTGACAACACCCCAAAGG 453 215 175 Antisense
TCACATCGTCAGCTCGTTGCAAATA 442 627 262 Antisense
GTCAATCGCCAACATGCACGAGCTT 339 463 291 Antisense
AAACGTCAAATTCACAGCTGTCCTT 574 125 329 Antisense
AGTTTCGACGATGGCCTCGCAAATC 703 61 401 Antisense
GCAACGACTACGCGAGACATATCCA 36 321 444 Antisense
AGACATTGACGCCCTCATGATAATC 417 71 513 Antisense
CATGATAATCAACCCTACCCAAACT 165 211 528 Antisense
AAGATTGGAAGCGCCGGCACGGCGT 657 153 643 Antisense
GAATTTGTGCAAGTTCTCCGAGGCG 502 325 689 Antisense
Sequence Source Affymetrix Proprietary Database