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[185124_at]

Description T10B11.5 /REP_DB=WormBase Gene ID /WP=CE18244 /TR=Q9TZH9 /GB=AAC67467.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 72      6grp_total > 74      4grp_total > 09      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1242
1 2 3 4 range
A 185.8
(-3)
P 		296
(-2.1)
P 		348.4
(-1.7)
P 		912.1
(3)
P 		726
B 140.6
(-3)
P 		300.7
(-2.1)
P 		295.1
(-2.1)
P 		1177.2
(3)
P 		1037
C 239.1
(-3)
P 		352.5
(-2.4)
P 		421
(-2)
P 		1382.5
(3)
P 		1143
avr 188.5
(-3) 		316.4
(-2.2) 		354.8
(-2) 		1157.3
(3) 		969

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 441
1 2 3 4 5 6 range
A 229.1
(-3)
P 		312.3
(-1.5)
P 		560.1
(3)
P 		503.4
(2)
P 		417.4
(0.4)
P 		328.9
(-1.2)
P 		331
B 164.8
(-3)
P 		307.9
(-1.1)
P 		606
(3)
P 		530.9
(2)
P 		391.3
(0.1)
P 		395.3
(0.1)
P 		441
C 192.7
(-3)
P 		330.5
(-0.8)
P 		413.9
(0.5)
P 		577
(3)
P 		337.3
(-0.7)
P 		501.9
(1.8)
P 		384
avr 195.5
(-3) 		316.9
(-0.9) 		526.7
(2.8) 		537.1
(3) 		382
(0.3) 		408.7
(0.7) 		342
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 67.6
(-2.7)
P 		64.3
(-3)
P 		91.1
(-0.7)
P 		133.5
(3)
P 		69
B 44.8
(-3)
P 		74.3
(-2.1)
P 		68.4
(-2.3)
P 		250.9
(3)
P 		206
C 79.1
(-3)
P 		101.4
(-2.1)
P 		146.7
(-0.4)
P 		233.1
(3)
P 		154
avr 63.8
(-3) 		80
(-2.3) 		102.1
(-1.4) 		205.8
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 42.2
(-3)
P 		111.1
(1.8)
P 		122
(2.6)
P 		127.7
(3)
P 		125.9
(2.9)
P 		80.1
(-0.3)
P 		86
B 57.3
(-3)
P 		102.5
(-0.3)
P 		147.2
(2.3)
P 		140.6
(1.9)
P 		159
(3)
P 		147.4
(2.3)
P 		102
C 71.4
(-3)
P 		100.8
(-1.2)
P 		105.3
(-0.9)
P 		116
(-0.2)
P 		109.2
(-0.7)
P 		168
(3)
P 		97
avr 57
(-3) 		104.8
(0.8) 		124.8
(2.4) 		128.1
(2.7) 		131.4
(3) 		131.8
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2090
Sequence Type Exemplar sequence
Representative Public ID T10B11.5 NCBI
Target Description T10B11.5 /REP_DB=WormBase Gene ID /WP=CE18244 /TR=Q9TZH9 /GB=AAC67467.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059578 NCBI Caenorhabditis elegans T10B11.5 (T10B11.5) mRNA, complete cds. 11/11 None
GENEFINDER00000021322 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6945195:6950082:-1 11/11 None
SNAP00000021311 ENSEMBL cdna:SNAP chromosome:CEL140:I:6948381:6950082:-1 11/11 None
T10B11.5 ENSEMBL cdna:known chromosome:CEL140:I:6948381:6950082:-1 gene:T10B11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6948311-6950013(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B11.5
Entrez Gene 188370 Entrez gene
SwissProt Q9TZH9 EMBL-EBI
WormBase CE18244 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491978 T10B11.4 [Caenorhabditis elegans] gb|AAC67464.1| Hypothetical protein T10B11.4 [Caenorhabditis elegans] 0.0
blast NP_491979 T10B11.5 [Caenorhabditis elegans] gb|AAC67467.1| Hypothetical protein T10B11.5 [Caenorhabditis elegans] 1.0E-162
blast NP_491979 T10B11.5 [Caenorhabditis elegans] gb|AAC67467.1| Hypothetical protein T10B11.5 [Caenorhabditis elegans] 1.0E-145
blast CAE60335 Hypothetical protein CBG03927 [Caenorhabditis briggsae] 1.0E-128
blast CAE60335 Hypothetical protein CBG03927 [Caenorhabditis briggsae] 1.0E-113
blast CAE59804 Hypothetical protein CBG03266 [Caenorhabditis briggsae] 1.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR008547 EMBL-EBI Eukaryotic protein of unknown function DUF829 4.5E-113
Pfam IPR008547 EMBL-EBI Eukaryotic protein of unknown function DUF829 4.6E-101
Sequence
Target Sequence 
>C. ELEGANS:185124_AT
gactctgtccttataaatccttcaaatcgtcttgtatttcatgtattctctatgaatgga
tttattgcactcacttctcttgattcacaatttccagaattaaaagcaattgaaaaatgc
gatggaatatttatggattcatgtccagcatgcttctctttttcaattgagaatatgcaa
aaacatgcattggtcatgaatcatgtttatgatcaattgatcaaaaactcgaatttcgta
cttggaaacttttataaagtttacaagaaatgggaaacagcaaggtttggatatcaaatg
attatggacacaatgtctataaaagctggattgtgtacaattgaagaggcaaatccgttc
ttttatctattgaatcatccacatcttccaccaatcttaacttctattttttccgataat
gacattgtttgttctgctgatgaaatcaacttattcaacgagtgtgctgcaaagaaaagt
gataagaagagacaaatcatggcgactaggctaaaagatactgcacacgtcgaacacttc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCTGTCCTTATAAATCCTTCAA 674 371 226 Antisense
ATCGTCTTGTATTTCATGTATTCTC 634 35 251 Antisense
ATGGATTTATTGCACTCACTTCTCT 511 51 281 Antisense
TCACTTCTCTTGATTCACAATTTCC 70 629 296 Antisense
TGGATTCATGTCCAGCATGCTTCTC 577 549 359 Antisense
CAGCATGCTTCTCTTTTTCAATTGA 577 203 371 Antisense
GAGGCAAATCCGTTCTTTTATCTAT 601 405 571 Antisense
CTATTGAATCATCCACATCTTCCAC 479 223 592 Antisense
TTAACTTCTATTTTTTCCGATAATG 426 681 622 Antisense
GAGACAAATCATGGCGACTAGGCTA 215 391 714 Antisense
GATACTGCACACGTCGAACACTTCA 679 423 742 Antisense
Sequence Source Affymetrix Proprietary Database