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[185123_at]

Description F36F12.5 /REP_DB=WormBase Gene ID /WP=CE17785 /TR=O76400 /GB=AAC19204.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 22.3
(-2.8)
A 		75.1
(0.6)
A 		18.4
(-3)
A 		112.3
(3)
A 		94
B 9.7
(-3)
A 		76.2
(3)
A 		58.1
(1.4)
A 		52.2
(0.8)
A 		67
C 48.4
(3)
A 		19.5
(-1.5)
A 		9.6
(-3)
A 		18.1
(-1.7)
A 		39
avr 26.8
(-3) 		56.9
(2.3) 		28.7
(-2.7) 		60.9
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 14.3
(-2.5)
A 		14.6
(-2.5)
A 		13.2
(-2.6)
A 		68.9
(3)
A 		30.7
(-0.9)
A 		9.4
(-3)
A 		60
B 20.5
(-2.1)
A 		52.2
(2.4)
A 		37.6
(0.4)
A 		14.1
(-3)
A 		56.1
(3)
A 		16.6
(-2.6)
A 		42
C 74.9
(1)
A 		52.2
(-0.3)
A 		30.5
(-1.6)
A 		107.8
(3)
A 		7.9
(-3)
A 		11.8
(-2.8)
A 		100
avr 36.6
(-0.2) 		39.7
(0.2) 		27.1
(-1.3) 		63.6
(3) 		31.6
(-0.8) 		12.6
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8.1
(-1.3)
A 		16.3
(2.9)
A 		4.8
(-3)
A 		16.4
(3)
A 		12
B 3.1
(-3)
A 		18.8
(3)
A 		13.5
(1)
A 		11.1
(0.1)
A 		16
C 16
(3)
A 		5.6
(-1.8)
A 		3.3
(-2.9)
A 		3.1
(-3)
A 		13
avr 9.1
(-1.2) 		13.6
(3) 		7.2
(-3) 		10.2
(-0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.6
(-2.9)
A 		5.2
(-1.9)
A 		2.9
(-2.8)
A 		17.5
(3)
A 		9.3
(-0.2)
A 		2.3
(-3)
A 		15
B 7.1
(-1.9)
A 		17.4
(1.3)
A 		9.1
(-1.3)
A 		3.7
(-3)
A 		22.8
(3)
A 		6.2
(-2.2)
A 		19
C 27.8
(3)
A 		15.9
(0.2)
A 		7.8
(-1.8)
A 		21.7
(1.5)
A 		2.6
(-3)
A 		4
(-2.7)
A 		25
avr 12.5
(1.9) 		12.8
(2.1) 		6.6
(-1.6) 		14.3
(3) 		11.6
(1.4) 		4.2
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15212
Sequence Type Exemplar sequence
Representative Public ID F36F12.5 NCBI
Target Description F36F12.5 /REP_DB=WormBase Gene ID /WP=CE17785 /TR=O76400 /GB=AAC19204.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071167 NCBI Caenorhabditis elegans F36F12.5 (F36F12.5) mRNA, complete cds. 11/11 None
SNAP00000033957 ENSEMBL cdna:SNAP chromosome:CEL140:V:2095910:2097056:1 11/11 None
GENEFINDER00000033964 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2095910:2097525:1 11/11 None
F36F12.5 ENSEMBL cdna:known chromosome:CEL140:V:2095910:2097085:1 gene:F36F12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2095909-2097056(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36F12.5
Entrez Gene 178688 Entrez gene
SwissProt O76400 EMBL-EBI
WormBase CE17785 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19204 Hypothetical protein F36F12.5 [Caenorhabditis elegans] ref|NP_503568.1| F36F12.5 [Caenorhabditis elegans] 1.0E-108
blast AAC19204 Hypothetical protein F36F12.5 [Caenorhabditis elegans] ref|NP_503568.1| F36F12.5 [Caenorhabditis elegans] 1.0E-106
blast AAC19205 Hypothetical protein F36F12.6 [Caenorhabditis elegans] ref|NP_503569.1| F36F12.6 [Caenorhabditis elegans] 1.0E-97
blast AAC19205 Hypothetical protein F36F12.6 [Caenorhabditis elegans] ref|NP_503569.1| F36F12.6 [Caenorhabditis elegans] 7.0E-96
blast CAB05021 Hypothetical protein ZK39.8 [Caenorhabditis elegans] ref|NP_492872.1| ZK39.8 [Caenorhabditis elegans] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:185123_AT
gcaggccgcctcggaagagattctgcaaaccaagcatgcgccactcagggaggagtactc
tcagggatgcagaatgtcgaagagatcaactatattgtttcccagtctttgagcgtgatt
tccccagcaagaagtgggggcgtttgggttggagctcgacgccgaccagcttgtatcagc
tcaggaatcactgcaacttgtacaaagactaatagcttctactggactgacaactcggct
actggaatcaatggaatgcttttcacgaatggagagccaaataatggaggggtaaaattg
gatcaggattgtgcactgcttactgtagccagcaccccggtggttttcaacaaattcaga
actggacaaatggatgatgttccatgcacgtggcaggatcctaccccaaccgccgacaag
gccaacaaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGCCGCCTCGGAAGAGATTCTG 404 311 223 Antisense
AAGCATGCGCCACTCAGGGAGGAGT 263 151 254 Antisense
CTATATTGTTTCCCAGTCTTTGAGC 687 223 312 Antisense
TTCCCAGTCTTTGAGCGTGATTTCC 664 697 321 Antisense
GCGTGATTTCCCCAGCAAGAAGTGG 523 291 335 Antisense
GCAAGAAGTGGGGGCGTTTGGGTTG 30 317 349 Antisense
CGACCAGCTTGTATCAGCTCAGGAA 85 251 385 Antisense
AGACTAATAGCTTCTACTGGACTGA 89 67 428 Antisense
GGATTGTGCACTGCTTACTGTAGCC 40 509 528 Antisense
TGCACTGCTTACTGTAGCCAGCACC 377 577 534 Antisense
CAACCGCCGACAAGGCCAACAAAGG 589 185 629 Antisense
Sequence Source Affymetrix Proprietary Database