[Home] | [Total List]

[185122_s_at]

Description F42E11.2B /REP_DB=WormBase Gene ID /WP=CE23715 /TR=Q20332 /GB=CAB60289.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 73      6grp_total > 91      4grp_total > 47      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 616
(3)
P 		317.7
(-3)
P 		353.2
(-2.3)
P 		370.3
(-1.9)
P 		298
B 509
(3)
P 		430.6
(0.6)
P 		314.2
(-3)
P 		331.4
(-2.5)
P 		195
C 616.4
(3)
P 		424.2
(-2.8)
P 		491.2
(-0.8)
P 		416.9
(-3)
P 		200
avr 580.5
(3) 		390.8
(-2.5) 		386.2
(-2.6) 		372.9
(-3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 452.3
(-1.3)
P 		763.3
(3)
P 		328.5
(-3)
P 		674.4
(1.8)
P 		499.4
(-0.6)
P 		498.5
(-0.7)
P 		435
B 497.8
(1)
P 		459.9
(0.1)
P 		318.8
(-3)
P 		489
(0.8)
P 		588.8
(3)
P 		526.6
(1.6)
P 		270
C 648.1
(3)
P 		521.2
(-0.7)
P 		609.8
(1.9)
P 		481.2
(-1.9)
P 		572.7
(0.8)
P 		442.7
(-3)
P 		205
avr 532.7
(1.2) 		581.5
(3) 		419
(-3) 		548.2
(1.8) 		553.6
(2) 		489.3
(-0.4) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 224.3
(3)
P 		69
(-2.5)
P 		92.3
(-1.7)
P 		54.2
(-3)
P 		170
B 162.3
(3)
P 		106.3
(-0.7)
P 		72.8
(-2.9)
P 		70.6
(-3)
P 		92
C 204.1
(3)
P 		122
(-0.7)
P 		171.2
(1.5)
P 		70.3
(-3)
P 		134
avr 196.9
(3) 		99.1
(-1.4) 		112.1
(-0.9) 		65
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 83.4
(-2.6)
P 		271.4
(3)
P 		71.5
(-3)
P 		171.1
(-0)
P 		150.7
(-0.6)
P 		121.4
(-1.5)
P 		200
B 173.2
(0.6)
P 		153.1
(-0.2)
P 		77.4
(-3)
P 		129.5
(-1.1)
P 		239.2
(3)
P 		196.4
(1.4)
P 		162
C 240.2
(3)
P 		159
(-0.4)
P 		155.2
(-0.6)
P 		96.8
(-3)
P 		185.3
(0.7)
P 		148.2
(-0.8)
P 		143
avr 165.6
(1.1) 		194.5
(3) 		101.4
(-3) 		132.5
(-1) 		191.7
(2.8) 		155.3
(0.5) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185122_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16443
Sequence Type Exemplar sequence
Representative Public ID F42E11.2B NCBI
Target Description F42E11.2B /REP_DB=WormBase Gene ID /WP=CE23715 /TR=Q20332 /GB=CAB60289.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077502(11), NM_171973(11), NM_077503(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077502 NCBI Caenorhabditis elegans F42E11.2a (F42E11.2) mRNA, complete cds. 11/11 A 
NM_171973 NCBI Caenorhabditis elegans F42E11.2c (F42E11.2) mRNA, complete cds. 11/11 A 
NM_077503 NCBI Caenorhabditis elegans F42E11.2b (F42E11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000010147 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11368682:11373947:1 11/11 None
F42E11.2c ENSEMBL cdna:known chromosome:CEL140:X:11368643:11374239:1 gene:F42E11.2 11/11 A 
F42E11.2b ENSEMBL cdna:known chromosome:CEL140:X:11368682:11370622:1 gene:F42E11.2 11/11 None
F42E11.2a ENSEMBL cdna:known chromosome:CEL140:X:11368682:11374254:1 gene:F42E11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11368681-11370593(+) 100.0 100.0
Public Domain and Genome References
Ensembl F42E11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91464 Hypothetical protein F42E11.2a [Caenorhabditis elegans] ref|NP_509903.1| F42E11.2a [Caenorhabditis elegans] 0.0
blast CAE70650 Hypothetical protein CBG17353 [Caenorhabditis briggsae] 0.0
blast CAD44123 Hypothetical protein F42E11.2c [Caenorhabditis elegans] ref|NP_741904.1| F42E11.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006990 EMBL-EBI Tweety 1.0E-126
Pfam IPR006990 EMBL-EBI Tweety 1.7E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509903.1 5 40-62,83-105,217-239,246-268,394-416
NP_741904.1 5 40-62,83-105,217-239,246-268,394-416
NP_509904.1 2 40-62,83-105
F42E11.2c 5 40-62,83-105,217-239,246-268,394-416
F42E11.2b 2 40-62,83-105
F42E11.2a 5 40-62,83-105,217-239,246-268,394-416
GENEFINDER00000010147 5 40-62,83-105,217-239,246-268,394-416
Sequence
Target Sequence 
>C. ELEGANS:185122_S_AT
gacatttgcgtcatttttgatcaacttctactccgttatacctcggttgaactttaaatt
tcactggacgaacgatgtattcaatttggagtggagcagtgaatactttcaggcattggc
attagtggcatgtctgggagccgccgtcagtcttctccttcttgtcaccatcattattgt
ctggatatgtcaagcatgccacaagaacgaaacgaccggaaaaacaaggcgacgtgttcg
aagactgtctacagttctctttatcatttctgtgctttgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTTGCGTCATTTTTGATCAAC 240 371 15 Antisense
TGATCAACTTCTACTCCGTTATACC 478 563 32 Antisense
TACTCCGTTATACCTCGGTTGAACT 613 643 43 Antisense
GTGAATACTTTCAGGCATTGGCATT 484 479 113 Antisense
ATTAGTGGCATGTCTGGGAGCCGCC 398 11 135 Antisense
TCCTTCTTGTCACCATCATTATTGT 104 593 170 Antisense
GTCTGGATATGTCAAGCATGCCACA 542 471 193 Antisense
GCATGCCACAAGAACGAAACGACCG 584 309 208 Antisense
GGCGACGTGTTCGAAGACTGTCTAC 102 543 242 Antisense
GACTGTCTACAGTTCTCTTTATCAT 707 375 257 Antisense
TCTTTATCATTTCTGTGCTTTGCTT 580 615 272 Antisense
Sequence Source Affymetrix Proprietary Database