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[185121_at]

Description Y67A10A.2 /REP_DB=WormBase Gene ID /WP=CE24564 /TR=Q9U1U8 /GB=CAB60452.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 63      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 3.8
(-3)
A 		12.4
(-0.8)
A 		27.3
(3)
A 		5.9
(-2.5)
A 		24
B 4.9
(-2.6)
A 		6.5
(-2.3)
A 		32.3
(3)
A 		2.9
(-3)
A 		29
C 44.8
(3)
A 		4.6
(-2.7)
A 		2.3
(-3)
A 		3.4
(-2.8)
A 		43
avr 17.8
(2) 		7.8
(-1.7) 		20.6
(3) 		4.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.4
(1.4)
A 		3.4
(-2.5)
A 		3.3
(-2.6)
A 		2.9
(-3)
A 		9
(3)
A 		3.3
(-2.6)
A 		6
B 20.5
(3)
A 		11
(-0.1)
A 		3.3
(-2.7)
A 		6.4
(-1.6)
A 		2.3
(-3)
A 		2.6
(-2.9)
A 		18
C 3.1
(-2.9)
A 		13.3
(2.5)
A 		3
(-3)
A 		4.2
(-2.4)
A 		3.5
(-2.7)
A 		14.3
(3)
A 		11
avr 10.3
(3) 		9.2
(2.1) 		3.2
(-3) 		4.5
(-1.9) 		4.9
(-1.6) 		6.7
(-0) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.4
(-2.5)
A 		2.7
(-1.3)
A 		7.1
(3)
A 		0.9
(-3)
A 		6
B 1.6
(-2.1)
A 		1.6
(-2.1)
A 		7.5
(3)
A 		0.6
(-3)
A 		7
C 14.8
(3)
A 		1.3
(-2.7)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		14
avr 5.9
(3) 		1.9
(-1.6) 		5.1
(2.1) 		0.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.4
(-0.9)
A 		1.2
(-1.5)
A 		0.7
(-3)
A 		0.7
(-3)
A 		2.7
(3)
A 		0.8
(-2.7)
A 		2
B 7.1
(3)
A 		3.7
(-0.2)
A 		0.8
(-3)
A 		1.7
(-2.1)
A 		0.9
(-2.9)
A 		1
(-2.8)
A 		6
C 1.2
(-2.4)
A 		4
(1.8)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1.1
(-2.6)
A 		4.8
(3)
A 		4
avr 3.2
(3) 		3
(2.5) 		0.8
(-3) 		1.1
(-2.3) 		1.6
(-1) 		2.2
(0.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9845
Sequence Type Exemplar sequence
Representative Public ID Y67A10A.2 NCBI
Target Description Y67A10A.2 /REP_DB=WormBase Gene ID /WP=CE24564 /TR=Q9U1U8 /GB=CAB60452.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070340(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070340 NCBI Caenorhabditis elegans Y67A10A.2 (Y67A10A.2) mRNA, complete cds. 11/11 None
SNAP00000008009 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14339935:14342079:1 11/11 None
GENEFINDER00000008025 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14338528:14342079:1 11/11 None
Y67A10A.2 ENSEMBL cdna:known chromosome:CEL140:IV:14337684:14342079:1 gene:Y67A10A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14337689-14342085(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67A10A.2
Entrez Gene 190506 Entrez gene
SwissProt Q9U1U8 EMBL-EBI
WormBase CE24564 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60452 Hypothetical protein Y67A10A.2 [Caenorhabditis elegans] ref|NP_502741.1| Y67A10A.2 [Caenorhabditis elegans] 0.0
blast CAB60452 Hypothetical protein Y67A10A.2 [Caenorhabditis elegans] ref|NP_502741.1| Y67A10A.2 [Caenorhabditis elegans] 1.0E-161
blast CAE73998 Hypothetical protein CBG21633 [Caenorhabditis briggsae] 5.0E-87
blast CAE73998 Hypothetical protein CBG21633 [Caenorhabditis briggsae] 1.0E-86
blast CAE71756 Hypothetical protein CBG18745 [Caenorhabditis briggsae] 2.0E-54
blast CAE71756 Hypothetical protein CBG18745 [Caenorhabditis briggsae] 3.0E-54
Sequence
Target Sequence 
>C. ELEGANS:185121_AT
tacaggaaccctgacgaccattgcaaattgggtgcattgtgctccgctaccggataatta
cacattggcatgttgtccagatgggggatattggacgacatggtcgggttacagtaaggt
ttcgaatcaggctgcgtggcagcgttcacgtacttgcctgtcgggaagctacaactgtcc
gtgtactggagattcggttatgattacacatacatgcccctgcacccctataaccgtcat
cacttcgacctcgaatacctgcgccggcggaacacttcatgacaatccattctccgtgag
gactccggtttttatgtcatcccagtgtgaaacccttgtagttctgaaagcgtcaaatat
ccggaataactttttcacgcttgccacagatggtgaacaggctcagggttcaataggtta
tatcgatacttctggaacttgccggcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGGAACCCTGACGACCATTGCA 454 641 1152 Antisense
AAATTGGGTGCATTGTGCTCCGCTA 226 115 1176 Antisense
TGCGTGGCAGCGTTCACGTACTTGC 327 581 1284 Antisense
GTACTTGCCTGTCGGGAAGCTACAA 511 459 1301 Antisense
GAAGCTACAACTGTCCGTGTACTGG 158 341 1316 Antisense
ATCACTTCGACCTCGAATACCTGCG 79 27 1390 Antisense
GACAATCCATTCTCCGTGAGGACTC 576 363 1432 Antisense
ACTCCGGTTTTTATGTCATCCCAGT 72 89 1453 Antisense
CATCCCAGTGTGAAACCCTTGTAGT 508 211 1469 Antisense
GGAATAACTTTTTCACGCTTGCCAC 600 533 1514 Antisense
ATACTTCTGGAACTTGCCGGCAATC 179 25 1577 Antisense
Sequence Source Affymetrix Proprietary Database