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[185120_at]

Description Y76G2A.2 /REP_DB=WormBase Gene ID /WP=CE23068 /TR=Q9TXY6 /GB=AAC78489.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 3.5
(-3)
A 		3.2
(-3)
A 		4.4
(-2.9)
A 		142
(3)
P 		139
B 21.4
(-0.3)
A 		3.5
(-3)
A 		4.1
(-2.9)
A 		43.1
(3)
A 		40
C 27.1
(-2.1)
A 		2.8
(-2.9)
A 		1.2
(-3)
A 		171
(3)
P 		170
avr 17.3
(-2.3) 		3.2
(-3) 		3.2
(-3) 		118.7
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 17.9
(-0.2)
A 		2.6
(-2.8)
A 		36.2
(3)
A 		2.4
(-2.8)
A 		18.3
(-0.1)
A 		1.4
(-3)
A 		35
B 2.4
(-2.6)
A 		16.7
(3)
A 		2.5
(-2.6)
A 		1.5
(-3)
A 		9.4
(0.1)
A 		5.7
(-1.3)
A 		15
C 1.4
(-3)
A 		31.6
(3)
A 		2.1
(-2.9)
A 		4.5
(-2.4)
A 		10.4
(-1.2)
A 		3.5
(-2.6)
A 		30
avr 7.2
(-1.1) 		17
(3) 		13.6
(1.6) 		2.8
(-3) 		12.7
(1.2) 		3.5
(-2.7) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 1.3
(-2.8)
A 		0.7
(-3)
A 		1.1
(-2.9)
A 		20.8
(3)
P 		20
B 6.8
(1.3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		9.2
(3)
A 		8
C 9
(-1.2)
A 		0.8
(-2.9)
A 		0.4
(-3)
A 		28.8
(3)
P 		28
avr 5.7
(-1.4) 		0.8
(-3) 		0.8
(-3) 		19.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.3
(-0.6)
A 		0.9
(-2.5)
A 		7.9
(3)
A 		0.6
(-2.8)
A 		5.5
(1.1)
A 		0.3
(-3)
A 		8
B 0.8
(-2.5)
A 		5.5
(3)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		3.8
(1)
A 		2.1
(-1)
A 		5
C 0.5
(-3)
A 		9.6
(3)
A 		0.5
(-3)
A 		0.9
(-2.7)
A 		3.4
(-1.1)
A 		1.2
(-2.5)
A 		9
avr 1.5
(-1.9) 		5.3
(3) 		3
(0.1) 		0.6
(-3) 		4.2
(1.6) 		1.2
(-2.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2034
Sequence Type Exemplar sequence
Representative Public ID Y76G2A.2 NCBI
Target Description Y76G2A.2 /REP_DB=WormBase Gene ID /WP=CE23068 /TR=Q9TXY6 /GB=AAC78489.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059324, NM_059328
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059328 NCBI Caenorhabditis elegans C06A5.10 (C06A5.10) mRNA, complete cds. None
Y76G2A.2 ENSEMBL cdna:known chromosome:CEL140:I:5987118:5987568:1 gene:Y76G2A.2 None
C06A5.10 ENSEMBL cdna:known chromosome:CEL140:I:5990654:5991104:-1 gene:C06A5.10 None
NM_059324 NCBI Caenorhabditis elegans Y76G2A.2 (Y76G2A.2) mRNA, complete cds. A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001109 1/11 Cross Hyb Matching Probes None
SNAP00000008922 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5985491-5987568(+) 74.12 92.28
Public Domain and Genome References
Gene Title

Ensembl Y76G2A.2
C06A5.10
Entrez Gene 3564771 Entrez gene
3565976 Entrez gene
SwissProt O01476 EMBL-EBI
WormBase CE07957 Wormbase
CE07957 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78489 Hypothetical protein Y76G2A.2 [Caenorhabditis elegans] gb|AAB52445.1| Hypothetical protein C06A5.10 [Caenorhabditis elegans] ref|NP_491725.2| Y76G2A.2 [Caenorhabditis elegans] ref|NP_491729.1| C06A5.10 [Caenorhabditis elegans] 4.0E-41
blast NP_001022086 F14D2.4b [Caenorhabditis elegans] gb|AAQ65204.1| Hypothetical protein F14D2.4b [Caenorhabditis elegans] 2.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491725.2 1 21-40
NP_491729.1 1 21-40
Y76G2A.2 1 21-40
C06A5.10 1 21-40
Sequence
Target Sequence 
>C. ELEGANS:185120_AT
gatcagaccatcagaaggtacccttacgatccttcttatctgaaggatcagatcatcaga
aggtacccatgtgatccttcggagctgaaggttcagaccatcaggaagagcttcacgata
ttccaagttagttggacgttttacagcttttcccaaaagaccatcgttcatacattcaat
tgtgagggaattataaccgaaaatcgattgaaaattgcattaaaaaacttattccagaaa
aatttgaaaaaaaggttgtcaccaaagatatgccccccaagatacaccccagtttgtcta
ctggatactttgcccccaaagaacctttgccaccctaaaagtttatcatctcggaatgaa
ggcctggaaaaagtttatgcgctcgaaatggacaatcgcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGACCATCAGAAGGTACCCTT 345 419 124 Antisense
CATCAGAAGGTACCCTTACGATCCT 212 211 132 Antisense
CAAGTTAGTTGGACGTTTTACAGCT 559 183 247 Antisense
GCTTTTCCCAAAAGACCATCGTTCA 509 303 269 Antisense
AAGACCATCGTTCATACATTCAATT 84 155 280 Antisense
TCGTTCATACATTCAATTGTGAGGG 354 601 287 Antisense
GAGGGAATTATAACCGAAAATCGAT 634 383 307 Antisense
ATTGCATTAAAAAACTTATTCCAGA 182 5 337 Antisense
AGGTTGTCACCAAAGATATGCCCCC 134 57 376 Antisense
GGAAAAAGTTTATGCGCTCGAAATG 563 525 489 Antisense
TGCGCTCGAAATGGACAATCGCGGC 417 583 501 Antisense
Sequence Source Affymetrix Proprietary Database