[Home] | [Total List]

[185119_at]

Description F47C12.1 /REP_DB=WormBase Gene ID /WP=CE10670 /TR=Q20535 /GB=AAC24388.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      4grp_high_8_8 > 44      6grp_total > 92      4grp_total > 43      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 124.1
(-3)
M 		243.3
(3)
P 		163
(-1)
A 		144.4
(-2)
A 		119
B 116.6
(-2.2)
P 		214.6
(3)
P 		170.3
(0.7)
P 		100.7
(-3)
P 		114
C 165
(-1.1)
P 		232.2
(3)
P 		148.8
(-2)
P 		132.9
(-3)
A 		99
avr 135.2
(-2.5) 		230
(3) 		160.7
(-1) 		126
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 95.9
(-3)
A 		168.6
(1.4)
P 		114.7
(-1.9)
A 		196.1
(3)
P 		141.9
(-0.2)
P 		114.6
(-1.9)
A 		100
B 122.1
(0.9)
P 		132
(2.1)
M 		118
(0.4)
P 		126.8
(1.5)
P 		139.5
(3)
P 		89.4
(-3)
P 		50
C 185.6
(1.6)
M 		103
(-1.9)
P 		113.6
(-1.4)
A 		129
(-0.8)
P 		220.7
(3)
P 		75.2
(-3)
P 		146
avr 134.5
(0.3) 		134.5
(0.3) 		115.4
(-1.2) 		150.6
(1.6) 		167.4
(3) 		93.1
(-3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 45.2
(1.6)
M 		52.8
(3)
P 		42.6
(1.1)
A 		21.1
(-3)
A 		32
B 37.2
(-0)
P 		53
(3)
P 		39.5
(0.4)
P 		21.5
(-3)
P 		32
C 54.6
(1.4)
P 		66.8
(3)
P 		51.9
(1)
P 		22.4
(-3)
A 		44
avr 45.7
(1) 		57.5
(3) 		44.7
(0.9) 		21.7
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 17.7
(-3)
A 		60
(3)
P 		25
(-2)
A 		49.7
(1.5)
P 		42.8
(0.6)
P 		27.9
(-1.6)
A 		42
B 42.5
(-0)
P 		43.9
(0.3)
M 		28.7
(-3)
P 		33.6
(-2)
P 		56.7
(3)
P 		33.4
(-2)
P 		28
C 68.8
(2.7)
M 		31.4
(-2.2)
P 		28.9
(-2.5)
A 		25.9
(-2.9)
P 		71.4
(3)
P 		25.2
(-3)
P 		46
avr 43
(0.2) 		45.1
(0.6) 		27.5
(-3) 		36.4
(-1.2) 		57
(3) 		28.8
(-2.7) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11174
Sequence Type Exemplar sequence
Representative Public ID F47C12.1 NCBI
Target Description F47C12.1 /REP_DB=WormBase Gene ID /WP=CE10670 /TR=Q20535 /GB=AAC24388.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068057 NCBI Caenorhabditis elegans F47C12.1 (F47C12.1) mRNA, complete cds. 11/11 None
SNAP00000026887 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3998614:4005260:1 11/11 None
GENEFINDER00000026892 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3998731:4005260:1 11/11 None
F47C12.1 ENSEMBL cdna:known chromosome:CEL140:IV:3998614:4005260:1 gene:F47C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3998619-4005266(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47C12.1
Entrez Gene 185914 Entrez gene
SwissProt Q20535 EMBL-EBI
WormBase CE10670 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1623259_AT dm
DROSOPHILA_2:1638227_AT dm
DROSGENOME1:145936_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24388 Hypothetical protein F47C12.1 [Caenorhabditis elegans] ref|NP_500458.1| F47C12.1 [Caenorhabditis elegans] 0.0
blast CAE61467 Hypothetical protein CBG05360 [Caenorhabditis briggsae] 0.0
blast EAL34471 GA21569-PA [Drosophila pseudoobscura] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000421 EMBL-EBI Coagulation factor 5/8 type C domain (FA58C) 3.6E-37
Pfam IPR006209 EMBL-EBI EGF-like domain 1.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 5.6E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.1E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 2.3E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-7
Pfam IPR003410 EMBL-EBI Hyalin 8.5E-35
Pfam IPR003410 EMBL-EBI Hyalin 1.3E-25
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 2.4E-10
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.8E-9
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 2.8E-11
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 6.2E-13
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.0E-7
Pfam IPR000421 EMBL-EBI Coagulation factor 5/8 type C domain (FA58C) 3.6E-37
Pfam IPR006209 EMBL-EBI EGF-like domain 1.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 5.6E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.1E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 2.3E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-7
Pfam IPR003410 EMBL-EBI Hyalin 8.5E-35
Pfam IPR003410 EMBL-EBI Hyalin 1.3E-25
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 2.4E-10
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.8E-9
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 2.8E-11
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 6.2E-13
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.0E-7
Sequence
Target Sequence 
>C. ELEGANS:185119_AT
gtaattctggcttggaaccttgctcggcatgcccgatcaacttctatcagccaaccgtcg
gacagcaaagctgcatcgagtgctctaacaccaccgcgactcaaaccaccggagaatccc
tcgaatcatcctgcttcccgatcgactgctcggcgaaaatgtgcgagaacaacgccgagt
gctcggtattcatgcacagagcccagtgtcactgcaagccaggatatgtcggagatcgct
gtgagatgctcgaggacgtgtgctccacacagccatgctataacggtgggaagtgtgagc
aagtgggcacaacttacaagtgcacgtgcccgaagatgtttaatggagccagatgtcaat
ttgagagtgatgagtgcaatggggtaaagtgtccgaatggaggtgtctgtcatgatttgc
caggggttaagtcgacgacatgtctgtgcagaaccggattcgccggaccccaatgcgagg
agatcaccgatatctgttctacaaacaacccttgtcgaaatggtgctcggtgtattggcg
agaagctcggaagattcaagtgccagtgtgtaccggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATTCTGGCTTGGAACCTTGCTC 118 463 4883 Antisense
TCTATCAGCCAACCGTCGGACAGCA 165 613 4925 Antisense
TCAAACCACCGGAGAATCCCTCGAA 237 627 4983 Antisense
TTCCCGATCGACTGCTCGGCGAAAA 104 697 5017 Antisense
TCATGCACAGAGCCCAGTGTCACTG 112 621 5072 Antisense
TGAGATGCTCGAGGACGTGTGCTCC 14 569 5124 Antisense
TGCTCCACACAGCCATGCTATAACG 64 581 5143 Antisense
AAGTGCACGTGCCCGAAGATGTTTA 691 157 5200 Antisense
GTCTGTGCAGAACCGGATTCGCCGG 254 471 5324 Antisense
GGACCCCAATGCGAGGAGATCACCG 487 523 5347 Antisense
GATTCAAGTGCCAGTGTGTACCGGG 531 427 5435 Antisense
Sequence Source Affymetrix Proprietary Database