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[185118_at]

Description F18A12.7 /REP_DB=WormBase Gene ID /WP=CE09460 /TR=O16793 /GB=AAB66073.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.2
(-3)
A 		7
(0.5)
A 		5.4
(-1)
A 		9.8
(3)
A 		7
B 5.4
(-0.9)
A 		11.3
(3)
A 		4.7
(-1.4)
A 		2.3
(-3)
A 		9
C 5.2
(-1.4)
A 		8.7
(3)
A 		3.9
(-3)
A 		5.8
(-0.6)
A 		5
avr 4.6
(-3) 		9
(3) 		4.7
(-2.9) 		6
(-1.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.2
(-1.6)
A 		1.3
(-3)
A 		2.8
(-2.3)
A 		2.1
(-2.6)
A 		13.3
(3)
A 		4.6
(-1.4)
A 		12
B 7.3
(1.7)
A 		9.1
(3)
A 		2
(-2.3)
A 		1.4
(-2.7)
A 		1
(-3)
A 		3.9
(-0.9)
A 		8
C 6.4
(3)
A 		4.7
(1)
A 		5.3
(1.7)
A 		3
(-1)
A 		1.3
(-3)
A 		3.2
(-0.8)
A 		5
avr 6
(3) 		5
(1.4) 		3.4
(-1.1) 		2.2
(-3) 		5.2
(1.7) 		3.9
(-0.3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(-3)
A 		1.5
(3)
A 		1.4
(1)
A 		1.4
(1)
A 		0
B 1.7
(0.1)
A 		2.8
(3)
A 		1.1
(-1.4)
A 		0.5
(-3)
A 		2
C 1.7
(-0.2)
A 		2.5
(3)
A 		1.4
(-1.4)
A 		1
(-3)
A 		2
avr 1.5
(-0.7) 		2.3
(3) 		1.3
(-1.6) 		1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.8
(-2.5)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		4
(3)
A 		1.1
(-2)
A 		4
B 2.6
(2.1)
A 		3
(3)
A 		0.5
(-2.8)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1.4
(-0.7)
A 		3
C 2.4
(3)
A 		1.4
(-0)
A 		1.3
(-0.3)
A 		0.6
(-2.4)
A 		0.4
(-3)
A 		1.1
(-0.9)
A 		2
avr 1.9
(3) 		1.6
(1.7) 		0.8
(-1.7) 		0.5
(-3) 		1.6
(1.7) 		1.2
(-0) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4348
Sequence Type Exemplar sequence
Representative Public ID F18A12.7 NCBI
Target Description F18A12.7 /REP_DB=WormBase Gene ID /WP=CE09460 /TR=O16793 /GB=AAB66073.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062134(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062134 NCBI Caenorhabditis elegans F18A12.7 (F18A12.7) mRNA, complete cds. 11/11 None
SNAP00000014578 ENSEMBL cdna:SNAP chromosome:CEL140:II:3411420:3414464:-1 11/11 None
GENEFINDER00000014584 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3411420:3414392:-1 11/11 None
F18A12.7 ENSEMBL cdna:known chromosome:CEL140:II:3411420:3414464:-1 gene:F18A12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3411418-3414463(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18A12.7
Entrez Gene 184632 Entrez gene
SwissProt O16793 EMBL-EBI
WormBase CE09460 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66073 Hypothetical protein F18A12.7 [Caenorhabditis elegans] ref|NP_494535.1| F18A12.7 [Caenorhabditis elegans] 0.0
blast AAB37934 Hypothetical protein F08D12.11 [Caenorhabditis elegans] ref|NP_494360.1| F08D12.11 [Caenorhabditis elegans] 2.0E-47
blast AAB37934 Hypothetical protein F08D12.11 [Caenorhabditis elegans] ref|NP_494360.1| F08D12.11 [Caenorhabditis elegans] 1.0E-44
blast AAB37931 Hypothetical protein F08D12.9 [Caenorhabditis elegans] ref|NP_494358.1| F08D12.9 [Caenorhabditis elegans] 2.0E-35
blast AAB37934 Hypothetical protein F08D12.11 [Caenorhabditis elegans] ref|NP_494360.1| F08D12.11 [Caenorhabditis elegans] 4.0E-31
Sequence
Target Sequence 
>C. ELEGANS:185118_AT
gatctgtgatgctttgaacggtttgaaaatacgttccacggattcaataggttgcacgaa
acggatagtgaactgcatgagaagcaactttcaaacattcaatttattgcttgaattacc
attcgatcatgttccatctcaaaagtatactcagaaacttctcctggaggaccaggagca
tgtagagtatcgttggacggtcaaggcgcagagtctgaagctaaacgatctgttggcaag
caactgctccagcttgacaatacagaactcattaataacatcccaagatataaacttgtt
tctcaagcactggatctggatcaaaggatttaattggaagcttaaaatgattgagtttgg
tggttcatgggatatgcaaatcgttctgaaaggcattgatcatacagtcgtttcgagata
ttggcatgatgagtatcagaagatgtttcatgcagaaatcccacgtggtactgggccgca
attgtttgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTGTGATGCTTTGAACGGTTTG 53 419 1455 Antisense
ACGTTCCACGGATTCAATAGGTTGC 541 89 1485 Antisense
TACCATTCGATCATGTTCCATCTCA 104 651 1571 Antisense
ACTCAGAAACTTCTCCTGGAGGACC 594 99 1603 Antisense
GTATCGTTGGACGGTCAAGGCGCAG 381 453 1641 Antisense
GCGCAGAGTCTGAAGCTAAACGATC 462 287 1660 Antisense
GATCTGTTGGCAAGCAACTGCTCCA 201 419 1681 Antisense
GCAACTGCTCCAGCTTGACAATACA 28 321 1694 Antisense
GGCATTGATCATACAGTCGTTTCGA 318 537 1846 Antisense
AGAAATCCCACGTGGTACTGGGCCG 508 69 1908 Antisense
GGTACTGGGCCGCAATTGTTTGTTA 478 503 1921 Antisense
Sequence Source Affymetrix Proprietary Database