[Home] | [Total List]

[185117_at]

Description C44E12.1 /REP_DB=WormBase Gene ID /WP=CE27852 /TR=Q18621 /GB=AAA80375.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 62      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 43      6grp_total > 61      4grp_total > 51      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 645.3
(-2.3)
P 		999.9
(3)
P 		955.4
(2.3)
P 		599.8
(-3)
P 		400
B 783.2
(-0.6)
P 		1091.7
(3)
P 		829.8
(-0.1)
P 		579.2
(-3)
P 		513
C 744.7
(-0.4)
P 		968.4
(3)
P 		815.3
(0.7)
P 		575.9
(-3)
P 		393
avr 724.4
(-1.1) 		1020
(3) 		866.8
(0.9) 		585
(-3) 		435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1059
1 2 3 4 5 6 range
A 952.2
(-2.2)
P 		1159.1
(-1)
P 		1843.1
(3)
P 		1619.4
(1.7)
P 		819
(-3)
P 		855
(-2.8)
P 		1024
B 829.7
(-3)
P 		1061.1
(-0.6)
P 		1356.4
(2.4)
P 		1414.6
(3)
P 		838.5
(-2.9)
P 		940.3
(-1.9)
P 		585
C 783.8
(-3)
P 		1116.6
(-1)
P 		1803.8
(3)
P 		1645.4
(2.1)
P 		920.7
(-2.2)
P 		901.8
(-2.3)
P 		1020
avr 855.2
(-3) 		1112.3
(-1.1) 		1667.8
(3) 		1559.8
(2.2) 		859.4
(-3) 		899
(-2.7) 		813
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 235
(2.5)
P 		217.1
(1.8)
P 		249.7
(3)
P 		87.8
(-3)
P 		162
B 249.8
(2.2)
P 		269.6
(3)
P 		192.3
(-0.2)
P 		123.4
(-3)
P 		146
C 246.5
(1.8)
P 		278.4
(2.8)
P 		284.1
(3)
P 		97.1
(-3)
P 		187
avr 243.8
(2.6) 		255
(3) 		242
(2.5) 		102.8
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 175.5
(-3)
P 		412.2
(3)
P 		401.4
(2.7)
P 		410.7
(3)
P 		247.1
(-1.2)
P 		208.2
(-2.2)
P 		237
B 288.7
(-3)
P 		353.2
(1.5)
P 		329.4
(-0.2)
P 		374.7
(3)
P 		340.7
(0.6)
P 		350.6
(1.3)
P 		86
C 290.5
(-3)
P 		340.7
(-1.2)
P 		459.1
(3)
P 		330.9
(-1.6)
P 		297.9
(-2.7)
P 		301.9
(-2.6)
P 		169
avr 251.6
(-3) 		368.7
(1.8) 		396.6
(3) 		372.1
(2) 		295.2
(-1.2) 		286.9
(-1.5) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17232
Sequence Type Exemplar sequence
Representative Public ID C44E12.1 NCBI
Target Description C44E12.1 /REP_DB=WormBase Gene ID /WP=CE27852 /TR=Q18621 /GB=AAA80375.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076886 NCBI Caenorhabditis elegans C44E12.1 (C44E12.1) mRNA, complete cds. 11/11 None
SNAP00000016788 ENSEMBL cdna:SNAP chromosome:CEL140:X:7596900:7599723:1 11/11 None
GENEFINDER00000016792 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7596900:7599723:1 11/11 None
C44E12.1 ENSEMBL cdna:known chromosome:CEL140:X:7596869:7599750:1 gene:C44E12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7598500-7599722(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44E12.1
Entrez Gene 181023 Entrez gene
SwissProt Q18621 EMBL-EBI
WormBase CE27852 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80375 Hypothetical protein C44E12.1 [Caenorhabditis elegans] ref|NP_509287.1| C44E12.1 [Caenorhabditis elegans] 0.0
blast CAE70247 Hypothetical protein CBG16737 [Caenorhabditis briggsae] 1.0E-176
blast EAA71683 hypothetical protein FG03481.1 [Gibberella zeae PH-1] ref|XP_383657.1| hypothetical protein FG03481.1 [Gibberella zeae PH-1] 1.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR002933 EMBL-EBI Peptidase M20 8.7E-60
Sequence
Target Sequence 
>C. ELEGANS:185117_AT
gaaattgaccgtcactggccaagcaggacattcgggctaccctaactccggttcaagtgc
tattcacaaaatgatagaagttcttcatgatgtgcaacttgctaaatggccatgcgacgc
aaccaacggagctaccacgtataacattgggaaaatctctggtggtcaagctttgaacgc
atgggcggcaaactgtgaagcagacattttcttccgtgtagtaacttctgtgaaggatat
tcaaaatcagcttttagcattggtcaatggtcgtgcagaagtgagcctgctcagctttaa
tgacccagttattctcgacgttcctccaattgaagcagagctagaccacgtttcatttaa
cacagatattgcatactttgacgcaagagataaggtgaaagcgaagtatctttttggtgg
tggctcaatcaaaaatgctcactccaaaaacgaattcatcccaaaggatgagcttcataa
gtgcaccgcaactcttgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTGACCGTCACTGGCCAAGCA 451 363 213 Antisense
GGCCAAGCAGGACATTCGGGCTACC 525 543 229 Antisense
TACCCTAACTCCGGTTCAAGTGCTA 192 647 250 Antisense
GCTAAATGGCCATGCGACGCAACCA 89 301 313 Antisense
GTCAAGCTTTGAACGCATGGGCGGC 386 463 377 Antisense
AAGCAGACATTTTCTTCCGTGTAGT 144 151 410 Antisense
GAGCCTGCTCAGCTTTAATGACCCA 477 385 495 Antisense
TAATGACCCAGTTATTCTCGACGTT 217 635 510 Antisense
CTCGACGTTCCTCCAATTGAAGCAG 105 233 526 Antisense
AGCAGAGCTAGACCACGTTTCATTT 675 75 546 Antisense
ATAAGTGCACCGCAACTCTTGTCAA 248 25 689 Antisense
Sequence Source Affymetrix Proprietary Database