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[185116_s_at]

Description R07C12.2 /REP_DB=WormBase Gene ID /WP=CE17205 /TR=O44524 /GB=AAB94151.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_high_8_8 > 33      6grp_highest_nonorm > 90      6grp_total > 36      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 362.2
(3)
P 		127.7
(-1.9)
P 		77.6
(-3)
P 		126.9
(-2)
P 		285
B 338.2
(3)
P 		109.7
(-1.8)
P 		92.1
(-2.1)
P 		49.6
(-3)
A 		289
C 320.5
(3)
P 		144.1
(-1.7)
P 		94
(-3)
P 		108.5
(-2.6)
A 		227
avr 340.3
(3) 		127.2
(-2.1) 		87.9
(-3) 		95
(-2.8) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 165.7
(1.5)
P 		188.5
(3)
P 		152.8
(0.6)
P 		105
(-2.6)
P 		98.3
(-3)
P 		125.6
(-1.2)
P 		90
B 172.3
(3)
P 		133.5
(0.4)
P 		83.6
(-3)
P 		115.9
(-0.8)
P 		88.2
(-2.7)
P 		139.7
(0.8)
P 		89
C 136.6
(1.6)
P 		157.2
(3)
P 		131.4
(1.2)
P 		108.2
(-0.3)
P 		69
(-3)
P 		122
(0.6)
P 		88
avr 158.2
(2.9) 		159.7
(3) 		122.6
(0) 		109.7
(-1) 		85.2
(-3) 		129.1
(0.5) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 131.9
(3)
P 		27.7
(-2.5)
P 		20.3
(-2.9)
P 		18.6
(-3)
P 		113
B 107.9
(3)
P 		27.1
(-2)
P 		21.3
(-2.3)
P 		10.6
(-3)
A 		97
C 106.1
(3)
P 		41.4
(-1.4)
P 		32.8
(-2)
P 		18.3
(-3)
A 		88
avr 115.3
(3) 		32.1
(-2) 		24.8
(-2.5) 		15.8
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 30.6
(-2.4)
P 		67
(3)
P 		33.3
(-2)
P 		26.6
(-3)
P 		29.7
(-2.5)
P 		30.6
(-2.4)
P 		40
B 60
(3)
P 		44.4
(0.6)
P 		20.3
(-3)
P 		30.7
(-1.4)
P 		35.8
(-0.7)
P 		52.1
(1.8)
P 		40
C 50.6
(3)
P 		48
(2.5)
P 		33.4
(-0.6)
P 		21.8
(-3)
P 		22.3
(-2.9)
P 		40.8
(1)
P 		29
avr 47.1
(1.7) 		53.1
(3) 		29
(-2.4) 		26.4
(-3) 		29.3
(-2.3) 		41.2
(0.3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185116_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11187
Sequence Type Exemplar sequence
Representative Public ID R07C12.2 NCBI
Target Description R07C12.2 /REP_DB=WormBase Gene ID /WP=CE17205 /TR=O44524 /GB=AAB94151.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068095 NCBI Caenorhabditis elegans R07C12.4 (R07C12.4) mRNA, complete cds. 11/11 None
GENEFINDER00000031229 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11253947:11257970:1 11/11 None
SNAP00000031224 ENSEMBL cdna:SNAP chromosome:CEL140:I:11256394:11257970:1 11/11 None
F46A8.11 ENSEMBL cdna:pseudogene chromosome:CEL140:I:11256222:11257970:1 gene:F46A8.11 11/11 A 
R07C12.4 ENSEMBL cdna:known chromosome:CEL140:IV:4150746:4152318:1 gene:R07C12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009680 4/11 Cross Hyb Matching Probes None
GENEFINDER00000009693 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4147530-4152250(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46A8.11
R07C12.4
Entrez Gene 259564 Entrez gene
SwissProt Q95X68 EMBL-EBI
WormBase CE29445 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T22258 hypothetical protein F46A8.2 - Caenorhabditis elegans 0.0
blast T15070 hypothetical protein R07C12.2 - Caenorhabditis elegans 0.0
blast AAL06048 Hypothetical protein R07C12.4 [Caenorhabditis elegans] ref|NP_500496.1| R07C12.4 [Caenorhabditis elegans] 1.0E-145
blast T15070 hypothetical protein R07C12.2 - Caenorhabditis elegans 1.0E-127
blast AAL06048 Hypothetical protein R07C12.4 [Caenorhabditis elegans] ref|NP_500496.1| R07C12.4 [Caenorhabditis elegans] 1.0E-121
blast T15070 hypothetical protein R07C12.2 - Caenorhabditis elegans 1.0E-110
blast AAL06048 Hypothetical protein R07C12.4 [Caenorhabditis elegans] ref|NP_500496.1| R07C12.4 [Caenorhabditis elegans] 1.0E-108
blast T22258 hypothetical protein F46A8.2 - Caenorhabditis elegans 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:185116_S_AT
ttttccacttgcggatccattgttctaatactatcaaagcgaaacccaaacgaggttgaa
attaccaatctagttgccaaaattcgatcccatcatggaatagttcatgtaatttcttca
aatactccatcaggcggatcccaaccacttactctctatgacctctcatctaaaacaaat
gggctagccgatttccggaatgatgatgaatttgacgagtctgtcataccatttgctggg
ctgaactatcccatagttaattacgcggtgaatccattagtatccggcaatggctccact
gtactgcctccactataccaagctcatcccagccaagccaagttcacagttactgtacag
aatcatggtcccattgatacatttcaatcatttgagcttttttggtacaacgcttcatcg
tctacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCCACTTGCGGATCCATTGTTC 419 677 955 Antisense
TCCACTTGCGGATCCATTGTTCTAA 253 589 958 Antisense
GCGGATCCATTGTTCTAATACTATC 506 293 965 Antisense
TCTAATACTATCAAAGCGAAACCCA 568 609 978 Antisense
AACAAATGGGCTAGCCGATTTCCGG 64 131 1128 Antisense
TTTGCTGGGCTGAACTATCCCATAG 178 667 1186 Antisense
CTATCCCATAGTTAATTACGCGGTG 446 223 1200 Antisense
TTACGCGGTGAATCCATTAGTATCC 110 683 1215 Antisense
GGTGAATCCATTAGTATCCGGCAAT 431 499 1221 Antisense
TCCATTAGTATCCGGCAATGGCTCC 590 589 1227 Antisense
TGGTACAACGCTTCATCGTCTACCA 10 553 1357 Antisense
Sequence Source Affymetrix Proprietary Database