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[185115_s_at]

Description Y49F6B.7 /REP_DB=WormBase Gene ID /WP=CE25340 /TR=Q9N4U7 /GB=AAF60733.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 8.1
(-1.7)
A 		17.9
(0.7)
A 		2.7
(-3)
A 		27.5
(3)
A 		25
B 37.3
(0.6)
A 		2.6
(-3)
A 		6.6
(-2.6)
A 		60.5
(3)
A 		58
C 6.7
(-2.3)
A 		26.7
(0.7)
A 		1.8
(-3)
A 		42
(3)
A 		40
avr 17.4
(-0.9) 		15.7
(-1.2) 		3.7
(-3) 		43.3
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 19.8
(-0.8)
A 		1.1
(-3)
A 		12.6
(-1.6)
A 		2.7
(-2.8)
A 		4.8
(-2.6)
A 		51.7
(3)
A 		51
B 11.8
(-2.2)
A 		6.8
(-2.7)
A 		7.1
(-2.7)
A 		3.4
(-3)
A 		33
(-0.3)
A 		69.3
(3)
A 		66
C 1.3
(-3)
A 		2.6
(-2.9)
A 		7
(-2.4)
A 		52
(2.6)
A 		13.3
(-1.7)
A 		55.3
(3)
A 		54
avr 11
(-2.2) 		3.5
(-3) 		8.9
(-2.4) 		19.4
(-1.3) 		17
(-1.5) 		58.8
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3
(1.2)
A 		3.9
(2.8)
A 		0.7
(-3)
A 		4
(3)
A 		3
B 11.9
(2.5)
A 		0.6
(-3)
A 		1.5
(-2.6)
A 		12.9
(3)
A 		12
C 2.2
(-1.6)
A 		7.7
(3)
A 		0.6
(-3)
A 		7.1
(2.5)
A 		7
avr 5.7
(1.1) 		4.1
(-0.3) 		0.9
(-3) 		8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 3.7
(-1.4)
A 		0.4
(-3)
A 		2.7
(-1.9)
A 		0.7
(-2.9)
A 		1.5
(-2.5)
A 		12.6
(3)
A 		12
B 4.1
(-2.2)
A 		2.3
(-2.7)
A 		1.7
(-2.8)
A 		0.9
(-3)
A 		13.4
(0)
A 		25.9
(3)
A 		25
C 0.5
(-3)
A 		0.8
(-2.9)
A 		1.8
(-2.6)
A 		10.4
(0.3)
A 		4.3
(-1.7)
A 		18.5
(3)
A 		18
avr 2.8
(-2.5) 		1.2
(-3) 		2.1
(-2.7) 		4
(-2.1) 		6.4
(-1.2) 		19
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185115_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4656
Sequence Type Exemplar sequence
Representative Public ID Y49F6B.7 NCBI
Target Description Y49F6B.7 /REP_DB=WormBase Gene ID /WP=CE25340 /TR=Q9N4U7 /GB=AAF60733.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062156(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062156 NCBI Caenorhabditis elegans Y49F6B.7 (Y49F6B.7) mRNA, complete cds. 11/11 None
SNAP00000021094 ENSEMBL cdna:SNAP chromosome:CEL140:II:3475669:3477183:-1 11/11 None
Y49F6B.7 ENSEMBL cdna:known chromosome:CEL140:II:3475669:3477183:-1 gene:Y49F6B.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021112 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3475667-3477182(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49F6B.7
Entrez Gene 173692 Entrez gene
SwissProt Q9N4U7 EMBL-EBI
WormBase CE25340 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494557 Y49F6B.7 [Caenorhabditis elegans] gb|AAF60733.1| Hypothetical protein Y49F6B.7 [Caenorhabditis elegans] 0.0
blast AAB37932 Hypothetical protein F08D12.8 [Caenorhabditis elegans] ref|NP_494357.1| F08D12.8 [Caenorhabditis elegans] 8.0E-13
blast AAB37931 Hypothetical protein F08D12.9 [Caenorhabditis elegans] ref|NP_494358.1| F08D12.9 [Caenorhabditis elegans] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:185115_S_AT
gatgagagttttggactacccgaaaatcgatatagtgaagatagaggatgatggatttga
aacggcagatggagttattttgatggatgtgttagaaggagtaaaagtagaagcctacga
gagttgtattaaatctgaaaagtgtattgagcaagttcaaagtaacttttgctgctctca
gattctggaaataaaatctgaaataccgaagacaagaacaattcaacaattgctcagcag
caatttcgatgagctcacctatttccaaatgactcctcaatcaggcctcacactgaatga
tatattactccttaacagtaaaagtgtaaagttacagtcttctatattaagcatgaaaga
gtggaatctagtgataaagcatttgatcaatggaggatgtcctatacttcaatcagtaac
tattgtcaattctccgagaagattggatataaaagttttgatgaaaggagtgaactatgt
ggagtgttatgataaaagtgaagaagtgatagtggatagtgaagctgttcgggtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGAGTTTTGGACTACCCGAAA 200 411 381 Antisense
GTAGAAGCCTACGAGAGTTGTATTA 540 455 487 Antisense
GTAACTTTTGCTGCTCTCAGATTCT 102 463 542 Antisense
AGCAATTTCGATGAGCTCACCTATT 106 77 619 Antisense
GCTCACCTATTTCCAAATGACTCCT 435 301 633 Antisense
CAAATGACTCCTCAATCAGGCCTCA 685 191 646 Antisense
CAGGCCTCACACTGAATGATATATT 73 209 662 Antisense
GTTACAGTCTTCTATATTAAGCATG 414 445 711 Antisense
TGGAGGATGTCCTATACTTCAATCA 608 549 771 Antisense
CAGTAACTATTGTCAATTCTCCGAG 531 207 794 Antisense
GTGGATAGTGAAGCTGTTCGGGTTA 658 487 892 Antisense
Sequence Source Affymetrix Proprietary Database