[Home] | [Total List]

[185113_at]

Description F19G12.4 /REP_DB=WormBase Gene ID /WP=CE07087 /TR=Q19597 /GB=AAG24066.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.6
(-3)
A 		2.3
(-2.7)
A 		2.1
(-2.8)
A 		17.8
(3)
A 		16
B 3.2
(-2.2)
A 		2.1
(-2.9)
A 		1.9
(-3)
A 		12
(3)
A 		10
C 1.7
(-2.8)
A 		2.5
(-1.8)
A 		1.5
(-3)
A 		6.6
(3)
A 		5
avr 2.2
(-2.8) 		2.3
(-2.7) 		1.8
(-3) 		12.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.3
(-3)
A 		2.8
(-2.8)
A 		15.6
(2.1)
A 		4.1
(-2.3)
A 		17.8
(3)
A 		6.9
(-1.2)
A 		16
B 2.1
(-2.8)
A 		1.7
(-3)
A 		2.2
(-2.8)
A 		3
(-2.5)
A 		16.7
(3)
A 		8.8
(-0.2)
A 		15
C 2.1
(-2.2)
A 		5.9
(3)
A 		3.9
(0.3)
A 		2.3
(-1.9)
A 		3.5
(-0.3)
A 		1.5
(-3)
A 		4
avr 2.2
(-3) 		3.5
(-2.3) 		7.2
(-0.1) 		3.1
(-2.5) 		12.7
(3) 		5.7
(-1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.6
(-2.7)
A 		0.5
(-3)
A 		0.5
(-3)
A 		2.6
(3)
A 		2
B 1
(-1.4)
A 		0.5
(-2.7)
A 		0.4
(-3)
A 		2.6
(3)
A 		2
C 0.6
(-2)
A 		0.7
(-1)
A 		0.5
(-3)
A 		1.1
(3)
A 		1
avr 0.7
(-2.3) 		0.6
(-2.6) 		0.5
(-3) 		2.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1
(-2.3)
A 		3.4
(0.6)
A 		1
(-2.3)
A 		5.4
(3)
A 		1.7
(-1.4)
A 		5
B 0.7
(-2.8)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		0.8
(-2.7)
A 		6.8
(3)
A 		3.3
(-0.3)
A 		6
C 0.8
(-1.6)
A 		1.8
(3)
A 		1
(-0.7)
A 		0.5
(-3)
A 		1.1
(-0.2)
A 		0.5
(-3)
A 		1
avr 0.6
(-3) 		1.1
(-2.2) 		1.6
(-1.4) 		0.8
(-2.7) 		4.4
(3) 		1.8
(-1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18330
Sequence Type Exemplar sequence
Representative Public ID F19G12.4 NCBI
Target Description F19G12.4 /REP_DB=WormBase Gene ID /WP=CE07087 /TR=Q19597 /GB=AAG24066.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075866 NCBI Caenorhabditis elegans F19G12.4 (F19G12.4) mRNA, complete cds. 11/11 None
F19G12.4 ENSEMBL cdna:known chromosome:CEL140:X:1417299:1417472:1 gene:F19G12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018683 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1417298-1417472(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19G12.4
Entrez Gene 184694 Entrez gene
SwissProt Q19597 EMBL-EBI
WormBase CE07087 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24066 Hypothetical protein F19G12.4 [Caenorhabditis elegans] ref|NP_508267.1| F19G12.4 [Caenorhabditis elegans] 7.0E-27
Sequence
Target Sequence 
>C. ELEGANS:185113_AT
actcttttctgtacatggtgacccttcgattatcgaaccaagcttcatctcatcatacag
tcgaaaacaatcagaatgcacatcggactggcgaggagccatatccgacatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTTTTCTGTACATGGTGACCCT 219 99 44 Antisense
TTCTGTACATGGTGACCCTTCGATT 335 691 50 Antisense
ACATGGTGACCCTTCGATTATCGAA 251 107 56 Antisense
GATTATCGAACCAAGCTTCATCTCA 66 431 71 Antisense
TCGAACCAAGCTTCATCTCATCATA 653 599 76 Antisense
TCATCTCATCATACAGTCGAAAACA 27 621 88 Antisense
GTCGAAAACAATCAGAATGCACATC 655 473 103 Antisense
ATCAGAATGCACATCGGACTGGCGA 592 25 113 Antisense
TGCACATCGGACTGGCGAGGAGCCA 174 577 120 Antisense
GGACTGGCGAGGAGCCATATCCGAC 265 525 128 Antisense
TGGCGAGGAGCCATATCCGACATGT 597 543 132 Antisense
Sequence Source Affymetrix Proprietary Database