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[185112_at]

Description F55F10.2 /REP_DB=WormBase Gene ID /WP=CE17878 /TR=O61850 /GB=AAC17541.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 06      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 6
(1.1)
A 		7
(3)
A 		5.4
(-0.1)
A 		3.9
(-3)
A 		3
B 31.1
(0)
A 		2.9
(-3)
A 		3.3
(-3)
A 		58.4
(3)
A 		56
C 2.5
(-3)
A 		3.2
(-2.4)
A 		9.8
(3)
A 		3
(-2.6)
A 		7
avr 13.2
(0) 		4.4
(-3) 		6.2
(-2.4) 		21.8
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4.2
(-2.6)
A 		2.7
(-2.8)
A 		2.4
(-2.9)
A 		1.5
(-3)
A 		2.6
(-2.8)
A 		38.3
(3)
A 		37
B 2.1
(-3)
A 		3.8
(0.1)
A 		5.4
(3)
A 		3.4
(-0.6)
A 		2.1
(-3)
A 		2.4
(-2.5)
A 		3
C 2.6
(-2.4)
A 		6.1
(2.7)
A 		2.5
(-2.6)
A 		6.3
(3)
A 		2.2
(-3)
A 		2.9
(-2)
A 		4
avr 3
(-2.7) 		4.2
(-2.1) 		3.4
(-2.5) 		3.7
(-2.3) 		2.3
(-3) 		14.5
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.2
(3)
A 		1.5
(0.4)
A 		1.4
(-0)
A 		0.6
(-3)
A 		2
B 9.9
(1.7)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		12.5
(3)
A 		12
C 0.8
(-2.4)
A 		0.9
(-2.2)
A 		3.4
(3)
A 		0.5
(-3)
A 		3
avr 4.3
(2.7) 		1
(-3) 		1.9
(-1.5) 		4.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-2.7)
A 		1
(-2.6)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		0.8
(-2.7)
A 		9.3
(3)
A 		9
B 0.7
(-3)
A 		1.3
(3)
A 		1.3
(3)
A 		0.9
(-1)
A 		0.9
(-1)
A 		0.9
(-1)
A 		1
C 1
(-1.2)
A 		1.9
(3)
A 		0.6
(-3)
A 		1.3
(0.2)
A 		0.7
(-2.5)
A 		1
(-1.2)
A 		1
avr 0.8
(-3) 		1.4
(-1.8) 		0.8
(-3) 		0.9
(-2.8) 		0.8
(-3) 		3.7
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11140
Sequence Type Exemplar sequence
Representative Public ID F55F10.2 NCBI
Target Description F55F10.2 /REP_DB=WormBase Gene ID /WP=CE17878 /TR=O61850 /GB=AAC17541.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068150(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068150 NCBI Caenorhabditis elegans F55F10.1 (F55F10.1) mRNA, complete cds. 10/11 A 
F55F10.1 ENSEMBL cdna:known chromosome:CEL140:IV:4360843:4386515:1 gene:F55F10.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4360848-4369693(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55F10.1
Entrez Gene 186322 Entrez gene
SwissProt O61851 EMBL-EBI
WormBase CE30377 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
160 two-component signal transduction system (phosphorelay) inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17540 Hypothetical protein F55F10.1 [Caenorhabditis elegans] ref|NP_500551.2| F55F10.1 [Caenorhabditis elegans] 0.0
blast CAE58521 Hypothetical protein CBG01673 [Caenorhabditis briggsae] 0.0
blast T33162 hypothetical protein F55F10.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.3E-5
Sequence
Target Sequence 
>C. ELEGANS:185112_AT
gaactcttacgaaccactggaacctcatccggatttccgagttttcttgtcgatggatgc
ccgagttggagagatctcaagagcaatgagaaaccgaagtgtggagatttatatcgagga
tggttggaatctatggccggatgatgtgcgaactgtggttggatcgaagatgagctctga
attgagcaggattgttgctcgagacttgacagtggagcagcaacttcacctggcggcact
tttacaagagaatggagagcatttttcgatggatcttgctttaaagcttgttggagctgc
tcagaaagattggaaagatcaggaaattgaagaaaatgaggaaattgaagaagagattct
cgttgaaaaatttgcgattgcacctaaaatcctggaaatttgcaatcttagtggagaata
tgaaaagttttggatttcgacgtggcaacgagctgcggctaacacgaaaactgcaaatgt
tgaggcaattctcatgacattcctctcctcgagcccttggattcttcagaatcttttgga
gaatttgaagggattttttggagccgctgctgttggtaaggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTCTTACGAACCACTGGAACCT 178 349 5490 Antisense
GGAACCTCATCCGGATTTCCGAGTT 253 531 5508 Antisense
TCTTGTCGATGGATGCCCGAGTTGG 475 615 5534 Antisense
ATGGCCGGATGATGTGCGAACTGTG 468 51 5622 Antisense
GACAGTGGAGCAGCAACTTCACCTG 73 369 5697 Antisense
TTCACCTGGCGGCACTTTTACAAGA 56 685 5714 Antisense
GATTTCGACGTGGCAACGAGCTGCG 106 429 5922 Antisense
GAGCTGCGGCTAACACGAAAACTGC 263 385 5939 Antisense
AGGCAATTCTCATGACATTCCTCTC 121 55 5972 Antisense
CTCGAGCCCTTGGATTCTTCAGAAT 408 231 5997 Antisense
TGGAGCCGCTGCTGTTGGTAAGGGA 216 547 6048 Antisense
Sequence Source Affymetrix Proprietary Database