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[185110_at]

Description F52C12.5 /REP_DB=WormBase Gene ID /WP=CE20841 /TR=Q9TXV3 /GB=AAC68957.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_high_8_8 > 34      6grp_highest_nonorm > 60      6grp_total > 08      4grp_total > 45      6grp_highest_sub > De      6grp_cgc > 10      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 397
1 2 3 4 range
A 685.7
(3)
P 		288.9
(-3)
P 		349.1
(-2.1)
P 		370.1
(-1.8)
A 		397
B 499.8
(0.7)
P 		590.7
(3)
P 		430.9
(-1)
P 		352.6
(-3)
P 		238
C 637.3
(3)
P 		568.1
(1.8)
P 		316.8
(-2.7)
P 		300.8
(-3)
P 		337
avr 607.6
(3) 		482.6
(0.2) 		365.6
(-2.5) 		341.2
(-3) 		266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 604.9
(3)
P 		455.9
(0.7)
P 		275.8
(-2.1)
P 		320.1
(-1.4)
P 		230.2
(-2.8)
P 		218.8
(-3)
P 		386
B 496.3
(3)
P 		255.3
(-2)
P 		283
(-1.4)
P 		297.8
(-1.1)
P 		234.5
(-2.4)
P 		207.8
(-3)
P 		289
C 641.1
(3)
P 		278.5
(-2.1)
P 		410.6
(-0.3)
P 		372.1
(-0.8)
P 		318.8
(-1.6)
P 		216.4
(-3)
P 		425
avr 580.8
(3) 		329.9
(-1.1) 		323.1
(-1.2) 		330
(-1.1) 		261.2
(-2.2) 		214.3
(-3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 249.7
(3)
P 		62.7
(-2.7)
P 		91.3
(-1.9)
P 		54.2
(-3)
A 		196
B 159.4
(3)
P 		145.9
(2)
P 		99.9
(-1.2)
P 		75.1
(-3)
P 		84
C 211
(3)
P 		163.3
(1.2)
P 		110.4
(-0.8)
P 		50.7
(-3)
P 		160
avr 206.7
(3) 		124
(-0.4) 		100.5
(-1.3) 		60
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 111.5
(0.2)
P 		162.2
(3)
P 		60.1
(-2.6)
P 		81.2
(-1.5)
P 		69.5
(-2.1)
P 		53.3
(-3)
P 		109
B 172.7
(3)
P 		85
(-2.1)
P 		68.7
(-3)
P 		78.9
(-2.4)
P 		95.3
(-1.5)
P 		77.5
(-2.5)
P 		104
C 237.6
(3)
P 		85
(-2.5)
P 		104.5
(-1.8)
P 		74.8
(-2.9)
P 		103.2
(-1.9)
P 		72.4
(-3)
P 		165
avr 173.9
(3) 		110.7
(-0.6) 		77.8
(-2.4) 		78.3
(-2.4) 		89.3
(-1.8) 		67.7
(-3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10664
Sequence Type Exemplar sequence
Representative Public ID F52C12.5 NCBI
Target Description F52C12.5 /REP_DB=WormBase Gene ID /WP=CE20841 /TR=Q9TXV3 /GB=AAC68957.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067743 NCBI Caenorhabditis elegans Erythroid-Like Transcription factor family member (elt-6) (elt-6) mRNA, complete cds. 11/11 A 
SNAP00000001422 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1917976:1921341:1 11/11 None
GENEFINDER00000001425 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1917976:1921341:1 11/11 None
F52C12.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:1917853:1921616:1 gene:F52C12.5 11/11 None
F52C12.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:1917976:1921616:1 gene:F52C12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1919095-1921347(+) 97.78 100.0
Public Domain and Genome References
Gene Title
Gene Symbol elt-6
Ensembl F52C12.5
Entrez Gene 176993 Entrez gene
SwissProt Q9TXV3 EMBL-EBI
WormBase CE31536 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68957 Erythroid-like transcription factor family protein 6 [Caenorhabditis elegans] ref|NP_500144.2| Erythroid-Like Transcription factor family member (elt-6) [Caenorhabditis elegans] gb|AAK32717.1| GATA-like transcription factor ELT-6 [Caenorhabditis elegans] 1.0E-178
blast AAC68957 Erythroid-like transcription factor family protein 6 [Caenorhabditis elegans] ref|NP_500144.2| Erythroid-Like Transcription factor family member (elt-6) [Caenorhabditis elegans] gb|AAK32717.1| GATA-like transcription factor ELT-6 [Caenorhabditis elegans] 1.0E-171
blast CAE67949 Hypothetical protein CBG13549 [Caenorhabditis briggsae] 3.0E-99
blast CAE67949 Hypothetical protein CBG13549 [Caenorhabditis briggsae] 1.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 8.2E-20
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 8.2E-20
Sequence
Target Sequence 
>C. ELEGANS:185110_AT
gatcccatggccaatccacaaaatatgatgaacttgctaaaccttgtgcagcaacaacaa
catcaagccgctgctcatcaccatgctcaacagcaggcgagagagcagaagcccgtaaaa
gccgaagagtcaaagcagcaggaaccgtcggagaacagaaaccaatcgccaagtgcgtct
gttgagcagactctgctcgatcagctctctatgcagttcaacgggaaatcaccatcacca
acagtacacgcatccaccgccgcggcggctggtagctcggaggacgatacaagtgccaac
tcgtccatctcgaaatgctccaattgctccacaataaaaacgacagcgtggcgaagggat
ttggaggggaagcttgtttgtaacgcgtgtggattgtattataggctgcataggacacat
cggccggttcacatgcgaaaagattttatccaacagcgattccgtagaagaatgagggaa
gatgaaaatccagcaaccagtcaagcagccgttttcagtcaacttctcggcctaccgagc
atg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCCATGGCCAATCCACAAAATA 302 417 421 Antisense
CTCATCACCATGCTCAACAGCAGGC 384 229 494 Antisense
AACCAATCGCCAAGTGCGTCTGTTG 635 147 580 Antisense
CTCGATCAGCTCTCTATGCAGTTCA 668 231 616 Antisense
TCAACGGGAAATCACCATCACCAAC 392 627 638 Antisense
GGGGAAGCTTGTTTGTAACGCGTGT 450 497 786 Antisense
GGCTGCATAGGACACATCGGCCGGT 651 539 824 Antisense
CATCGGCCGGTTCACATGCGAAAAG 428 199 838 Antisense
GATTTTATCCAACAGCGATTCCGTA 152 427 862 Antisense
ACCAGTCAAGCAGCCGTTTTCAGTC 573 81 916 Antisense
TCAACTTCTCGGCCTACCGAGCATG 281 631 939 Antisense
Sequence Source Affymetrix Proprietary Database