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[185108_at]

Description F36F12.1 /REP_DB=WormBase Gene ID /WP=CE17781 /TR=O76403 /GB=AAC19200.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 48      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 27.8
(3)
A 		5.1
(-3)
A 		7.1
(-2.5)
A 		10
(-1.7)
A 		23
B 7.7
(-1.9)
A 		10.8
(-0.6)
A 		19
(3)
A 		5.3
(-3)
A 		14
C 2.8
(-3)
A 		5.5
(-2.4)
A 		29
(3)
A 		5.9
(-2.3)
A 		26
avr 12.8
(0) 		7.1
(-3) 		18.4
(3) 		7.1
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 7.5
(-3)
A 		28.8
(-1.3)
A 		84.8
(3)
P 		67.6
(1.7)
A 		34.4
(-0.9)
A 		31.6
(-1.1)
A 		77
B 77.1
(3)
A 		71.2
(2.2)
A 		74.8
(2.7)
A 		58.7
(0.6)
A 		34.6
(-2.5)
A 		30.8
(-3)
A 		46
C 43.3
(-1.5)
A 		36.4
(-2.2)
A 		93.8
(3)
A 		93.4
(3)
A 		37.9
(-2)
A 		27.2
(-3)
A 		67
avr 42.6
(-1.6) 		45.5
(-1.3) 		84.5
(3) 		73.2
(1.8) 		35.6
(-2.4) 		29.9
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.1
(3)
A 		1.1
(-3)
A 		1.9
(-2.5)
A 		1.5
(-2.7)
A 		9
B 2.5
(-0.5)
A 		2.7
(-0.1)
A 		4.4
(3)
A 		1.1
(-3)
A 		3
C 0.9
(-3)
A 		1.6
(-2.5)
A 		10.1
(3)
A 		1
(-2.9)
A 		9
avr 4.5
(1.6) 		1.8
(-2.2) 		5.5
(3) 		1.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.4
(-3)
A 		10.2
(0.1)
A 		18.5
(3)
P 		17.2
(2.5)
A 		10.4
(0.2)
A 		7.7
(-0.8)
A 		17
B 26.8
(3)
A 		23.7
(1.8)
A 		18.2
(-0.4)
A 		15.5
(-1.4)
A 		14
(-2)
A 		11.5
(-3)
A 		15
C 16
(-0.2)
A 		11.1
(-2.2)
A 		23.9
(3)
A 		18.8
(0.9)
A 		12.3
(-1.7)
A 		9.1
(-3)
A 		15
avr 14.7
(-0.1) 		15
(0.1) 		20.2
(3) 		17.2
(1.3) 		12.2
(-1.4) 		9.4
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15549
Sequence Type Exemplar sequence
Representative Public ID F36F12.1 NCBI
Target Description F36F12.1 /REP_DB=WormBase Gene ID /WP=CE17781 /TR=O76403 /GB=AAC19200.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071170 NCBI Caenorhabditis elegans F36F12.1 (F36F12.1) mRNA, complete cds. 11/11 None
SNAP00000033961 ENSEMBL cdna:SNAP chromosome:CEL140:V:2100982:2102885:-1 10/11 None
GENEFINDER00000033962 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2099916:2103035:-1 11/11 None
F36F12.1 ENSEMBL cdna:known chromosome:CEL140:V:2099918:2103035:-1 gene:F36F12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033960 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2099937-2103035(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36F12.1
Entrez Gene 178691 Entrez gene
SwissProt O76403 EMBL-EBI
WormBase CE17781 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19200 Hypothetical protein F36F12.1 [Caenorhabditis elegans] ref|NP_503571.1| F36F12.1 [Caenorhabditis elegans] 0.0
blast CAE66796 Hypothetical protein CBG12157 [Caenorhabditis briggsae] 0.0
blast CAE66796 Hypothetical protein CBG12157 [Caenorhabditis briggsae] 1.0E-162
blast CAE75235 Hypothetical protein CBG23186 [Caenorhabditis briggsae] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-113
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-125
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503571.1 1 20-39
F36F12.1 1 20-39
Sequence
Target Sequence 
>C. ELEGANS:185108_AT
gtgaaatacagctccccagagaaccaaagtctcggagcacttctgacgagggctcaatcc
ggagaaactttaaaaatgggaagagcaattgttcgcccagaacggtacaattccacatgg
gcctattactcgacggaagctgaaaagcacccggtctacctggcggagcaagacgataag
ccacattatctgactagaaaagagattttaacgaatgcatttttaagattcagcaatttg
gaatatacatccgaaatcgacaactctacagtaatcccaatgaatccactgactacggat
aggcaacttttgagtgaggaacagctggcagagattgatcaagaattgaaagagacgctc
ctcatgccgagtattcaagaatttgtgaaacaattgccaaccgaagattattattcaaca
aaattgaaggcttgcctggaagctcaaaagcagggaaaggggcaatgtgtgaatacgaaa
gcgtgcaagctccccaacaacgacaaaatcccatgtcgacactctgatggtctctatcac
tccgggaaagtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAATACAGCTCCCCAGAGAACC 468 481 949 Antisense
GAACCAAAGTCTCGGAGCACTTCTG 492 345 969 Antisense
AGCACTTCTGACGAGGGCTCAATCC 632 75 984 Antisense
GGAAGAGCAATTGTTCGCCCAGAAC 564 529 1027 Antisense
GAACGGTACAATTCCACATGGGCCT 97 349 1048 Antisense
ACATGGGCCTATTACTCGACGGAAG 222 105 1063 Antisense
AAGCTGAAAAGCACCCGGTCTACCT 205 149 1085 Antisense
CGGTCTACCTGGCGGAGCAAGACGA 424 243 1100 Antisense
AATCGACAACTCTACAGTAATCCCA 268 169 1203 Antisense
AATCCCAATGAATCCACTGACTACG 118 167 1221 Antisense
GGTCTCTATCACTCCGGGAAAGTCA 458 501 1477 Antisense
Sequence Source Affymetrix Proprietary Database