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[185107_at]

Description F47C12.6 /REP_DB=WormBase Gene ID /WP=CE10680 /TR=Q20532 /GB=AAC24391.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 4.5
(0.4)
A 		3.3
(-1.2)
A 		1.9
(-3)
A 		6.5
(3)
A 		5
B 21.8
(3)
A 		5.5
(-1.8)
A 		2.3
(-2.8)
A 		1.6
(-3)
A 		20
C 1.3
(-3)
A 		2.8
(-2.8)
A 		3.8
(-2.6)
A 		40.5
(3)
A 		39
avr 9.2
(-0.1) 		3.9
(-2.5) 		2.7
(-3) 		16.2
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 1.8
(-3)
A 		5
(-2.4)
A 		27.2
(1.4)
A 		7.3
(-2.1)
A 		2.4
(-2.9)
A 		36.6
(3)
A 		35
B 10.7
(3)
A 		3
(-2.1)
A 		2.7
(-2.3)
A 		1.7
(-3)
A 		3
(-2.1)
A 		2.2
(-2.7)
A 		9
C 15.6
(3)
A 		4.3
(-2.8)
A 		3.9
(-3)
A 		7.1
(-1.4)
A 		4.6
(-2.6)
A 		8.1
(-0.8)
A 		12
avr 9.4
(-0) 		4.1
(-2.6) 		11.3
(0.9) 		5.4
(-2) 		3.3
(-3) 		15.6
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.6
(3)
A 		0.7
(-1.9)
A 		0.5
(-3)
A 		1
(-0.3)
A 		1
B 6.9
(3)
A 		1.4
(-2)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		7
C 0.4
(-3)
A 		0.8
(-2.6)
A 		1.3
(-2.2)
A 		6.8
(3)
A 		6
avr 3
(3) 		1
(-2.5) 		0.8
(-3) 		2.7
(2.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.8
(-2)
A 		5.9
(0.9)
A 		1.9
(-1.9)
A 		0.7
(-2.7)
A 		8.9
(3)
A 		9
B 3.7
(3)
A 		1
(-1.9)
A 		0.6
(-2.6)
A 		0.4
(-3)
A 		1.2
(-1.5)
A 		0.8
(-2.3)
A 		3
C 5.8
(3)
A 		1.3
(-2.6)
A 		1
(-3)
A 		1.4
(-2.5)
A 		1.5
(-2.4)
A 		2.7
(-0.9)
A 		5
avr 3.3
(1.4) 		1.4
(-2.4) 		2.5
(-0.2) 		1.2
(-2.8) 		1.1
(-3) 		4.1
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10661
Sequence Type Exemplar sequence
Representative Public ID F47C12.6 NCBI
Target Description F47C12.6 /REP_DB=WormBase Gene ID /WP=CE10680 /TR=Q20532 /GB=AAC24391.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068054(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068054 NCBI Caenorhabditis elegans F47C12.6 (F47C12.6) mRNA, complete cds. 11/11 None
F47C12.6 ENSEMBL cdna:known chromosome:CEL140:IV:3991644:3992234:-1 gene:F47C12.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026883 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3991649-3992240(-) 99.28 100.0
Public Domain and Genome References
Gene Title
Ensembl F47C12.6
Entrez Gene 185918 Entrez gene
SwissProt Q20532 EMBL-EBI
WormBase CE10680 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24391 Hypothetical protein F47C12.6 [Caenorhabditis elegans] ref|NP_500455.1| F47C12.6 [Caenorhabditis elegans] 1.0E-82
blast AAC24392 Hypothetical protein F47C12.7 [Caenorhabditis elegans] ref|NP_500456.1| F47C12.7 [Caenorhabditis elegans] 7.0E-20
blast AAA96161 Hypothetical protein F36A4.4 [Caenorhabditis elegans] ref|NP_500526.1| F36A4.4 [Caenorhabditis elegans] 7.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 1.9E-78
Sequence
Target Sequence 
>C. ELEGANS:185107_AT
ttcctaacttttctatgctcactaattcacggcgaccctattcactttgacgttgcaatc
cactgtgattcttcgatcaaattttggtgcggagatattatcatttacgaacatgataca
tggacatctcacgacatactccaacaaaaaaagttttgcacggcggaaaatgcaaaggat
tacaagttcactgtcagtccaggttgggactactcaacacactacgagtttgcctacgta
ctccaccataattgcactgccgaaggaatggatcgatgcctacgacctaacgaaaaaacc
aatgtatggacatttggagaacattccatcgatttcaacatccgtgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTAACTTTTCTATGCTCACTAA 529 699 31 Antisense
TCTATGCTCACTAATTCACGGCGAC 584 613 42 Antisense
GTTGCAATCCACTGTGATTCTTCGA 237 439 82 Antisense
TGGACATCTCACGACATACTCCAAC 704 547 151 Antisense
GATTACAAGTTCACTGTCAGTCCAG 309 429 208 Antisense
TTGGGACTACTCAACACACTACGAG 493 707 234 Antisense
CACTACGAGTTTGCCTACGTACTCC 598 193 250 Antisense
TACGTACTCCACCATAATTGCACTG 530 643 265 Antisense
AATTGCACTGCCGAAGGAATGGATC 658 177 280 Antisense
GATCGATGCCTACGACCTAACGAAA 710 415 301 Antisense
TCCATCGATTTCAACATCCGTGCTT 577 589 355 Antisense
Sequence Source Affymetrix Proprietary Database