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[185106_at]

Description Y105C5B.5 /REP_DB=WormBase Gene ID /WP=CE24081 /TR=Q9U315 /GB=CAB60313.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 96      6grp_total > 94      4grp_total > 04      6grp_highest_sub > In      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1142
1 2 3 4 range
A 786.6
(-1.9)
P 		614.1
(-3)
P 		623.4
(-2.9)
P 		1566.6
(3)
P 		953
B 893.7
(-0.8)
P 		590
(-2.5)
P 		491.4
(-3)
P 		1574.5
(3)
P 		1083
C 675.2
(-2.9)
P 		655.7
(-3)
P 		663.8
(-3)
P 		1633.8
(3)
P 		978
avr 785.2
(-1.8) 		619.9
(-2.8) 		592.9
(-3) 		1591.6
(3) 		999

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1551
1 2 3 4 5 6 range
A 459.9
(-3)
P 		1282.6
(3)
P 		1018.2
(1.1)
P 		1275.5
(2.9)
P 		797.9
(-0.5)
P 		1243.6
(2.7)
P 		823
B 550.5
(-3)
P 		591.6
(-2.5)
P 		789.6
(-0.1)
P 		643.9
(-1.9)
P 		1041.6
(3)
P 		944.6
(1.8)
P 		491
C 853.4
(-1.4)
P 		739.1
(-1.9)
P 		1212
(-0)
P 		442.1
(-3)
P 		1993.5
(3)
P 		998
(-0.9)
P 		1551
avr 621.3
(-3) 		871.1
(-0.7) 		1006.6
(0.5) 		787.2
(-1.5) 		1277.7
(3) 		1062.1
(1) 		656
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 286.4
(3)
P 		133.3
(-3)
P 		163
(-1.8)
P 		229.3
(0.8)
P 		153
B 285
(1.6)
P 		145.7
(-2.1)
P 		113.9
(-3)
P 		335.5
(3)
P 		222
C 223.5
(-0.6)
P 		188.5
(-3)
P 		231.4
(-0)
P 		275.5
(3)
P 		87
avr 265
(2.3) 		155.8
(-3) 		169.4
(-2.3) 		280.1
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 560
1 2 3 4 5 6 range
A 84.8
(-3)
P 		456.2
(3)
P 		221.7
(-0.8)
P 		323.5
(0.9)
P 		240.8
(-0.5)
P 		302.8
(0.5)
P 		371
B 191.6
(-2.5)
P 		196.9
(-2.4)
P 		191.7
(-2.5)
P 		170.5
(-3)
P 		423.2
(3)
P 		352.2
(1.3)
P 		253
C 316.3
(-0.5)
P 		225.5
(-1.5)
P 		308.5
(-0.6)
P 		88.9
(-3)
P 		645.1
(3)
P 		334.1
(-0.4)
P 		556
avr 197.6
(-2.9) 		292.9
(-0.6) 		240.6
(-1.9) 		194.3
(-3) 		436.4
(3) 		329.7
(0.4) 		242
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9848
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.5 NCBI
Target Description Y105C5B.5 /REP_DB=WormBase Gene ID /WP=CE24081 /TR=Q9U315 /GB=CAB60313.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070493 NCBI Caenorhabditis elegans Y105C5B.5 (Y105C5B.5) mRNA, complete cds. 11/11 None
SNAP00000018388 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15899961:15901145:-1 11/11 None
GENEFINDER00000018444 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15899961:15909001:-1 9/11 None
Y105C5B.5 ENSEMBL cdna:known chromosome:CEL140:IV:15899898:15901186:-1 gene:Y105C5B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15899966-15900460(-) 95.31 95.31
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.5
Entrez Gene 190888 Entrez gene
SwissProt Q9U315 EMBL-EBI
WormBase CE24081 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26380 hypothetical protein Y105C5B.d - Caenorhabditis elegans 1.0E-128
blast CAB60313 Hypothetical protein Y105C5B.5 [Caenorhabditis elegans] ref|NP_502894.1| Y105C5B.5 [Caenorhabditis elegans] 5.0E-69
blast T26380 hypothetical protein Y105C5B.d - Caenorhabditis elegans 8.0E-65
blast CAB60313 Hypothetical protein Y105C5B.5 [Caenorhabditis elegans] ref|NP_502894.1| Y105C5B.5 [Caenorhabditis elegans] 5.0E-61
blast AAQ62447 Hypothetical protein R02C2.7 [Caenorhabditis elegans] ref|NP_001024064.1| R02C2.7 [Caenorhabditis elegans] 4.0E-53
Sequence
Target Sequence 
>C. ELEGANS:185106_AT
gtcctacacagctcacgaagctcaagccgccttggctcctcaattcgatgcttacagtaa
ggcaattgagggttcggactgggatacggtagccacattttatcacccgaatggagtgat
tgtgcagaagggaaaggaggcgttttatggaaaagatgcaataaaagcggaattgctcaa
attttcggaggcaaccggcagatcaacttcctcattttccaatcaaaagtacgagggagc
tggtgactatctgattatcactgctgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTACACAGCTCACGAAGCTCAA 377 477 15 Antisense
TACACAGCTCACGAAGCTCAAGCCG 653 641 19 Antisense
CTCAATTCGATGCTTACAGTAAGGC 402 227 53 Antisense
GTAAGGCAATTGAGGGTTCGGACTG 263 463 71 Antisense
GAGGGTTCGGACTGGGATACGGTAG 373 1 82 Antisense
GATACGGTAGCCACATTTTATCACC 65 425 97 Antisense
ACCCGAATGGAGTGATTGTGCAGAA 418 89 119 Antisense
TCAAATTTTCGGAGGCAACCGGCAG 373 315 191 Antisense
GGAGGCAACCGGCAGATCAACTTCC 223 513 201 Antisense
GTACGAGGGAGCTGGTGACTATCTG 363 459 243 Antisense
GACTATCTGATTATCACTGCTGATT 316 373 259 Antisense
Sequence Source Affymetrix Proprietary Database