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[185105_s_at]

Description Y64G10A.3 /REP_DB=WormBase Gene ID /WP=CE22714 /TR=Q9NA65 /GB=CAB54468.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 14.8
(-3)
A 		82
(3)
A 		47.5
(-0.1)
A 		33.3
(-1.3)
A 		67
B 61.5
(3)
A 		16.8
(-3)
A 		38.6
(-0.1)
A 		49.3
(1.4)
A 		45
C 7.9
(-3)
A 		58.9
(1.7)
A 		29
(-1)
A 		72.7
(3)
A 		65
avr 28.1
(-3) 		52.6
(3) 		38.4
(-0.5) 		51.8
(2.8) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 45.1
(2.2)
A 		8.7
(-3)
A 		32.1
(0.4)
A 		8.9
(-3)
A 		16.4
(-1.9)
A 		50.6
(3)
A 		42
B 47.5
(0.9)
A 		52.5
(1.4)
A 		70.1
(3)
A 		39.5
(0.2)
A 		4.8
(-3)
A 		43.3
(0.5)
A 		65
C 41.4
(0.7)
A 		26.5
(-0.8)
A 		51.9
(1.8)
A 		63.2
(3)
A 		53
(1.9)
A 		5.9
(-3)
A 		57
avr 44.7
(1.5) 		29.2
(-2) 		51.4
(3) 		37.2
(-0.2) 		24.7
(-3) 		33.3
(-1.1) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.4
(-2.8)
A 		17.8
(3)
A 		12.4
(0.5)
A 		4.9
(-3)
A 		13
B 19.6
(3)
A 		4.2
(-3)
A 		8.9
(-1.2)
A 		10.5
(-0.5)
A 		15
C 2.6
(-3)
A 		16.9
(3)
A 		10.1
(0.1)
A 		12.3
(1.1)
A 		14
avr 9.2
(-3) 		13
(3) 		10.5
(-0.9) 		9.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.3
(0.6)
A 		3.1
(-2.5)
A 		7
(-0.2)
A 		2.3
(-3)
A 		4.9
(-1.4)
A 		12.3
(3)
A 		10
B 16.5
(2.6)
A 		17.5
(3)
A 		17
(2.8)
A 		10.5
(0.3)
A 		1.9
(-3)
A 		16.1
(2.5)
A 		16
C 15.4
(2.3)
A 		8.1
(-0.6)
A 		13.2
(1.4)
A 		12.7
(1.2)
A 		17.2
(3)
A 		2
(-3)
A 		15
avr 13.4
(3) 		9.6
(-1.2) 		12.4
(1.9) 		8.5
(-2.4) 		8
(-3) 		10.1
(-0.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185105_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10116
Sequence Type Exemplar sequence
Representative Public ID Y64G10A.3 NCBI
Target Description Y64G10A.3 /REP_DB=WormBase Gene ID /WP=CE22714 /TR=Q9NA65 /GB=CAB54468.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070333(11), NM_067140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070333 NCBI Caenorhabditis elegans Y64G10A.3 (Y64G10A.3) mRNA, complete cds. 11/11 A 
NM_067140 NCBI Caenorhabditis elegans Y56A3A.9 (Y56A3A.9) mRNA, complete cds. 11/11 A 
SNAP00000007401 ENSEMBL cdna:SNAP chromosome:CEL140:II:10633387:10637866:1 9/11 None
GENEFINDER00000007416 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10628180:10637866:1 9/11 None
GENEFINDER00000035230 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11883704:11884825:-1 11/11 None
GENEFINDER00000010764 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14245702:14246466:1 11/11 None
Y56A3A.9 ENSEMBL cdna:known chromosome:CEL140:III:11883704:11884825:-1 gene:Y56A3A.9 11/11 A 
Y64G10A.3 ENSEMBL cdna:known chromosome:CEL140:IV:14245702:14246466:1 gene:Y64G10A.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10637089-10637863(+) 95.16 95.16
chrIV:14245707-14246472(+) 100.0 100.0
chrIII:11883699-11884473(-) 95.16 95.16
Public Domain and Genome References
Gene Title

Ensembl Y56A3A.9
Y64G10A.3
Entrez Gene 190326 Entrez gene
190475 Entrez gene
SwissProt Q9U215 EMBL-EBI
Q9NA65 EMBL-EBI
WormBase CE25498 Wormbase
CE22714 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60526 Hypothetical protein Y56A3A.9 [Caenorhabditis elegans] ref|NP_499541.1| Y56A3A.9 [Caenorhabditis elegans] 0.0
blast CAA90130 Hypothetical protein M28.2 [Caenorhabditis elegans] ref|NP_496295.1| M28.2 [Caenorhabditis elegans] 0.0
blast CAA90132 Hypothetical protein M28.8 [Caenorhabditis elegans] ref|NP_496294.1| M28.8 [Caenorhabditis elegans] 0.0
blast CAE59633 Hypothetical protein CBG03046 [Caenorhabditis briggsae] 0.0
blast CAB60526 Hypothetical protein Y56A3A.9 [Caenorhabditis elegans] ref|NP_499541.1| Y56A3A.9 [Caenorhabditis elegans] 1.0E-173
blast CAA90129 Hypothetical protein M28.9 [Caenorhabditis elegans] ref|NP_496296.1| M28.9 [Caenorhabditis elegans] 1.0E-149
blast CAB54468 Hypothetical protein Y64G10A.3 [Caenorhabditis elegans] ref|NP_502734.1| Y64G10A.3 [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.0E-14
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.1E-20
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 4.6E-15
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.1E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000007401 4 98-120,141-163,411-433,445-467
GENEFINDER00000007416 10 96-118,139-161,386-408,415-437,667-689,826-848,929-951,972-994,1218-1240,1252-1274
Sequence
Target Sequence 
>C. ELEGANS:185105_S_AT
ttaagctcatgaaccagcaatatgcaatatccatgatgaaatctgcgggtcatccgtcaa
acggtctaacaggccgtagaaagatggcacgtaacacgacaagaagtagcaagccgccca
gggaacccccgctggacttccccgccaagacactagacgactggaagaaccacccaggct
ccacaaaaagcctgcagaaactaaaccacacaaaattcgttgctcacttcctggcgaacc
gaccgtcgaacaaaatactaggaattgctgcatcaaaagtctgcaaatcagaggaagagc
tccctcgtgaaacccggactgagctcgccagactgcgttgtggccactcaagattatgtg
gtgcttacgttgccaaaattgaaaatagaagcatttccccttgcaggaaatatggaagtg
tggagggtgacgtgaatcaccttttgacctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAGCTCATGAACCAGCAATATGC 62 683 215 Antisense
CACGACAAGAAGTAGCAAGCCGCCC 223 199 309 Antisense
CGACAAGAAGTAGCAAGCCGCCCAG 325 251 311 Antisense
GGCTCCACAAAAAGCCTGCAGAAAC 110 541 391 Antisense
AAAGCCTGCAGAAACTAAACCACAC 108 125 401 Antisense
GCCTGCAGAAACTAAACCACACAAA 252 283 404 Antisense
AACCACACAAAATTCGTTGCTCACT 660 147 418 Antisense
CACAAAATTCGTTGCTCACTTCCTG 184 195 423 Antisense
AGAAGCATTTCCCCTTGCAGGAAAT 511 71 601 Antisense
GGAAGTGTGGAGGGTGACGTGAATC 700 531 628 Antisense
TGACGTGAATCACCTTTTGACCTGC 448 569 642 Antisense
Sequence Source Affymetrix Proprietary Database