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[185104_at]

Description Y64G10A.3 /REP_DB=WormBase Gene ID /WP=CE22714 /TR=Q9NA65 /GB=CAB54468.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 3.7
(-3)
A 		4.7
(-2.8)
A 		36.7
(3)
A 		3.5
(-3)
A 		33
B 2
(-3)
A 		42.8
(3)
A 		7.2
(-2.2)
A 		2.9
(-2.9)
A 		41
C 6
(-2.7)
A 		7.9
(-2.5)
A 		2.4
(-3)
A 		72.7
(3)
A 		70
avr 3.9
(-3) 		18.5
(0.9) 		15.4
(0.1) 		26.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 53.5
(3)
A 		8.3
(-2.3)
A 		2
(-3)
A 		4.7
(-2.7)
A 		8.2
(-2.3)
A 		5.2
(-2.6)
A 		52
B 4
(-2.6)
A 		17.6
(3)
A 		5.6
(-2)
A 		4.2
(-2.5)
A 		3.1
(-3)
A 		4.9
(-2.3)
A 		15
C 2
(-3)
A 		5.5
(-2.5)
A 		5.7
(-2.5)
A 		43.7
(3)
A 		2.6
(-2.9)
A 		6.4
(-2.4)
A 		42
avr 19.8
(3) 		10.5
(-0.6) 		4.4
(-3) 		17.5
(2.1) 		4.6
(-2.9) 		5.5
(-2.6) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.4
(-2.4)
A 		1
(-2.7)
A 		9.6
(3)
A 		0.5
(-3)
A 		9
B 0.6
(-3)
A 		10.6
(3)
A 		1.7
(-2.3)
A 		0.6
(-3)
A 		10
C 2
(-2.4)
A 		2.3
(-2.2)
A 		0.8
(-3)
A 		12.3
(3)
A 		12
avr 1.3
(-3) 		4.6
(3) 		4
(1.9) 		4.5
(2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9.9
(3)
A 		3
(-1.4)
A 		0.4
(-3)
A 		1.2
(-2.5)
A 		2.5
(-1.7)
A 		1.3
(-2.4)
A 		10
B 1.4
(-2.6)
A 		5.8
(3)
A 		1.4
(-2.6)
A 		1.1
(-3)
A 		1.3
(-2.7)
A 		1.8
(-2.1)
A 		5
C 0.8
(-3)
A 		1.7
(-2.3)
A 		1.4
(-2.6)
A 		8.8
(3)
A 		0.8
(-3)
A 		2.1
(-2)
A 		8
avr 4
(3) 		3.5
(2) 		1.1
(-3) 		3.7
(2.4) 		1.5
(-2.2) 		1.7
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185104_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10116
Sequence Type Exemplar sequence
Representative Public ID Y64G10A.3 NCBI
Target Description Y64G10A.3 /REP_DB=WormBase Gene ID /WP=CE22714 /TR=Q9NA65 /GB=CAB54468.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070333 NCBI Caenorhabditis elegans Y64G10A.3 (Y64G10A.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000010764 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14245702:14246466:1 11/11 None
Y64G10A.3 ENSEMBL cdna:known chromosome:CEL140:IV:14245702:14246466:1 gene:Y64G10A.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10637089-10637863(+) 95.16 95.16
chrIV:14245707-14246472(+) 100.0 100.0
chrIII:11883699-11884473(-) 95.16 95.16
Public Domain and Genome References
Gene Title
Ensembl Y64G10A.3
Entrez Gene 190475 Entrez gene
SwissProt Q9NA65 EMBL-EBI
WormBase CE22714 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54468 Hypothetical protein Y64G10A.3 [Caenorhabditis elegans] ref|NP_502734.1| Y64G10A.3 [Caenorhabditis elegans] 1.0E-138
blast CAB60526 Hypothetical protein Y56A3A.9 [Caenorhabditis elegans] ref|NP_499541.1| Y56A3A.9 [Caenorhabditis elegans] 1.0E-128
blast T27754 hypothetical protein ZK1320.8 - Caenorhabditis elegans 5.0E-43
Sequence
Target Sequence 
>C. ELEGANS:185104_AT
catccacgacgaggctggtatccttcccttatcccacgaaattaagctcatgaaccagca
atatgcaatatccatgatgaaatctgcgggtcatccgtcaaacggtctaacaggccgtag
aaagatggcacgtaacacgacaagaagtagcaagccgcccagggaacccccgctggactt
ccccgccaagacactagacgactggaagaaccacccaggctccacaaaaagcctgcagaa
actaaaccacacaaaattcgttgctcacttcctggcgaaccgaccgtcgaacaaaatact
aggaattgctgcatcaaaagtctgcaaatcagaggaagagctccctcgtgaaacccggac
tgagctcgccagactgcgttgtggccactcaagattatgtggtgcttacgttgccaaaat
tgaaaatagaagcatttccccttgcaggaaatatggaagtgtggagggtgacgtgaatca
ccttttgacctgcatctcctcggtccccctactcccgaaggacctgtgggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCACGACGAGGCTGGTATCCTT 95 211 174 Antisense
ATATCCATGATGAAATCTGCGGGTC 408 19 241 Antisense
ATCTGCGGGTCATCCGTCAAACGGT 207 29 255 Antisense
GGGTCATCCGTCAAACGGTCTAACA 430 497 261 Antisense
ACAGGCCGTAGAAAGATGGCACGTA 415 107 283 Antisense
GATGGCACGTAACACGACAAGAAGT 15 407 297 Antisense
CGACTGGAAGAACCACCCAGGCTCC 525 251 372 Antisense
AAAATACTAGGAATTGCTGCATCAA 305 133 466 Antisense
GAATTGCTGCATCAAAAGTCTGCAA 91 321 476 Antisense
ATGTGGTGCTTACGTTGCCAAAATT 311 49 570 Antisense
CCTACTCCCGAAGGACCTGTGGGAG 333 269 681 Antisense
Sequence Source Affymetrix Proprietary Database