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[185103_at]

Description Y113G7B.7 /REP_DB=WormBase Gene ID /WP=CE23289 /TR=Q9U2X6 /GB=CAB54329.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 91      6grp_total > 96      4grp_total > 01      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 83.8
(-3)
P 		109.4
(-1.1)
P 		137.4
(1)
P 		163.8
(3)
P 		80
B 178.3
(3)
P 		95.8
(-3)
P 		104.3
(-2.4)
P 		177.3
(2.9)
P 		83
C 101.2
(-3)
P 		129.3
(-1.4)
P 		146.7
(-0.3)
P 		204.1
(3)
P 		103
avr 121.1
(-2.2) 		111.5
(-3) 		129.5
(-1.5) 		181.7
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 58.2
(-3)
P 		150.3
(-1)
P 		162.6
(-0.7)
P 		221.7
(0.6)
P 		331.8
(3)
P 		262.9
(1.5)
P 		274
B 99.4
(-3)
P 		124.4
(-2.4)
P 		163.6
(-1.4)
P 		274.6
(1.3)
P 		264.1
(1)
P 		344.5
(3)
P 		245
C 89.3
(-3)
P 		149.3
(-1.7)
P 		114.8
(-2.5)
P 		213.8
(-0.4)
P 		240.8
(0.2)
P 		372.9
(3)
P 		284
avr 82.3
(-3) 		141.3
(-1.6) 		147
(-1.4) 		236.7
(0.8) 		278.9
(1.8) 		326.8
(3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 30.5
(0.3)
P 		23.7
(-3)
P 		35.9
(3)
P 		24
(-2.9)
P 		12
B 56.9
(3)
P 		23.7
(-3)
P 		24.2
(-2.9)
P 		37.8
(-0.5)
P 		33
C 33.5
(-3)
P 		37.2
(-1.7)
P 		51.1
(3)
P 		34.4
(-2.7)
P 		18
avr 40.3
(3) 		28.2
(-3) 		37.1
(1.4) 		32.1
(-1.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 10.7
(-3)
P 		53.5
(-0.1)
P 		35.4
(-1.3)
P 		56.2
(0.1)
P 		100.1
(3)
P 		64
(0.6)
P 		89
B 34.6
(-3)
P 		41.4
(-2.6)
P 		39.7
(-2.7)
P 		72.7
(-0.6)
P 		107.3
(1.6)
P 		128.5
(3)
P 		94
C 33.1
(-2.8)
P 		45.6
(-2)
P 		29.2
(-3)
P 		43
(-2.1)
P 		77.9
(0.1)
P 		124.8
(3)
P 		96
avr 26.1
(-3) 		46.8
(-1.4) 		34.8
(-2.3) 		57.3
(-0.7) 		95.1
(2.2) 		105.8
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185103_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14750
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.7 NCBI
Target Description Y113G7B.7 /REP_DB=WormBase Gene ID /WP=CE23289 /TR=Q9U2X6 /GB=CAB54329.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075496 NCBI Caenorhabditis elegans Y113G7B.7 (Y113G7B.7) mRNA, complete cds. 11/11 None
SNAP00000024709 ENSEMBL cdna:SNAP chromosome:CEL140:V:20195001:20200756:1 11/11 None
GENEFINDER00000024725 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20199647:20200756:1 11/11 None
Y113G7B.7 ENSEMBL cdna:known chromosome:CEL140:V:20199647:20200756:1 gene:Y113G7B.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20199646-20200756(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.7
Entrez Gene 190972 Entrez gene
SwissProt Q9U2X6 EMBL-EBI
WormBase CE23289 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 1.0E-179
blast CAB54327 Hypothetical protein Y113G7B.5 [Caenorhabditis elegans] ref|NP_507896.1| Feminization Of Germline family member (fog-2) [Caenorhabditis elegans] 1.0E-168
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 1.0E-159
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 2.0E-83
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 2.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.5E-54
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.3E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.9E-56
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.3E-58
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.5E-54
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.3E-10
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.3E-12
Sequence
Target Sequence 
>C. ELEGANS:185103_AT
gaagcttcgattggacaagttcagtgtctccgcatatggaaattctaaaaaagttgtgga
gtggcttgaagagtatcacaactcacagaatatttataaaacgaaacgaataaaaatgga
atatctcgagtctagtgatgtcatctctatgctttcgtacttcaaacctagagttctcga
agaaattggcattcggtgcttggccaatttcacaaatatttccgaagtttccaacttatt
tgagctggaacagtggaagaaggcaaaatcacttacgatgagttcgatggaacatttcaa
cttccccattgaacacctctttcatttttcaaaattcactgtcttctggacgaaatgttc
agttgatgatgcaattaaattcagagatattatcatgaaatcgcctcatttcaaggcagg
attaatcttggctgatgacgaaatcgagccggaagttgtgaggcttttcgatccaagcta
catc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTTCGATTGGACAAGTTCAGT 493 341 381 Antisense
AAGTTCAGTGTCTCCGCATATGGAA 62 157 397 Antisense
GTCTAGTGATGTCATCTCTATGCTT 631 469 510 Antisense
GTACTTCAAACCTAGAGTTCTCGAA 686 457 537 Antisense
AGAAATTGGCATTCGGTGCTTGGCC 159 73 561 Antisense
CGGTGCTTGGCCAATTTCACAAATA 189 245 574 Antisense
ATTTCAACTTCCCCATTGAACACCT 379 7 674 Antisense
CATTGAACACCTCTTTCATTTTTCA 278 217 687 Antisense
TTCAAAATTCACTGTCTTCTGGACG 520 683 708 Antisense
GAAATCGCCTCATTTCAAGGCAGGA 132 363 777 Antisense
GAGGCTTTTCGATCCAAGCTACATC 89 405 840 Antisense
Sequence Source Affymetrix Proprietary Database