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[185102_at]

Description F55G1.13 /REP_DB=WormBase Gene ID /WP=CE07289 /TR=Q20852 /GB=AAB00653.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 38      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 51
(3)
A 		40.9
(1.5)
A 		9.7
(-2.9)
A 		9.3
(-3)
A 		42
B 75.1
(3)
A 		5
(-3)
A 		5.7
(-2.9)
A 		38.4
(-0.1)
A 		70
C 85.2
(3)
P 		62.8
(1.3)
A 		4.3
(-3)
A 		16.4
(-2.1)
A 		81
avr 70.4
(3) 		36.2
(-0.2) 		6.6
(-3) 		21.4
(-1.6) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 18.8
(-1.1)
A 		12.3
(-2.1)
A 		44.2
(3)
A 		29
(0.6)
A 		15
(-1.7)
A 		6.8
(-3)
A 		37
B 29.9
(3)
A 		22.9
(1.5)
A 		27
(2.4)
A 		6.5
(-2.1)
A 		2.2
(-3)
A 		4.8
(-2.4)
A 		28
C 30.2
(-1)
A 		43.8
(0.2)
A 		7.8
(-3)
A 		75.7
(3)
A 		20.6
(-1.9)
A 		49.7
(0.7)
A 		68
avr 26.3
(0.4) 		26.3
(0.4) 		26.3
(0.4) 		37.1
(3) 		12.6
(-3) 		20.4
(-1.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 18.6
(3)
A 		8.9
(-0.4)
A 		2.5
(-2.6)
A 		1.4
(-3)
A 		17
B 23.9
(3)
A 		1.2
(-3)
A 		1.3
(-3)
A 		8.2
(-1.1)
A 		23
C 28.2
(3)
P 		18
(0.7)
A 		1.5
(-3)
A 		2.8
(-2.7)
A 		27
avr 23.6
(3) 		9.4
(-0.9) 		1.8
(-3) 		4.1
(-2.4) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.5
(-1.6)
A 		4.4
(-0.9)
A 		9.6
(3)
A 		7.4
(1.3)
A 		4.5
(-0.9)
A 		1.7
(-3)
A 		8
B 10.4
(3)
A 		7.6
(1.2)
A 		6.6
(0.6)
A 		1.7
(-2.5)
A 		0.9
(-3)
A 		1.8
(-2.4)
A 		10
C 11.2
(0.8)
A 		13.4
(1.7)
A 		2
(-3)
A 		15.2
(2.4)
A 		6.7
(-1.1)
A 		16.6
(3)
A 		15
avr 8.4
(2.9) 		8.5
(3) 		6.1
(-0.2) 		8.1
(2.5) 		4
(-3) 		6.7
(0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9651
Sequence Type Exemplar sequence
Representative Public ID F55G1.13 NCBI
Target Description F55G1.13 /REP_DB=WormBase Gene ID /WP=CE07289 /TR=Q20852 /GB=AAB00653.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068806 NCBI Caenorhabditis elegans F55G1.13 (F55G1.13) mRNA, complete cds. 11/11 None
SNAP00000005176 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7493827:7501286:-1 11/11 None
F55G1.13 ENSEMBL cdna:known chromosome:CEL140:IV:7495340:7497666:-1 gene:F55G1.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005182 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7495345-7497672(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G1.13
Entrez Gene 3564809 Entrez gene
SwissProt Q20852 EMBL-EBI
WormBase CE07289 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00653 Hypothetical protein F55G1.13 [Caenorhabditis elegans] ref|NP_501207.1| F55G1.13 [Caenorhabditis elegans] 0.0
blast CAE61899 Hypothetical protein CBG05890 [Caenorhabditis briggsae] 0.0
blast AAB00655 Hypothetical protein F55G1.15 [Caenorhabditis elegans] ref|NP_501209.3| F55G1.15 [Caenorhabditis elegans] 1.0E-169
blast CAB63408 Hypothetical protein Y69H2.11 [Caenorhabditis elegans] ref|NP_507639.1| Y69H2.11 [Caenorhabditis elegans] 1.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 9.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 9.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 7.7E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000005176 11 24-46,53-75,95-117,137-159,174-196,242-264,319-341,362-384,394-416,473-495,1407-1438
Sequence
Target Sequence 
>C. ELEGANS:185102_AT
gaacatgcgttcctacatacaacctattagattccacgttcacttgtcaatgtacacctg
attggaagggaacatattgtgaagaagaacgatattattgcgatgaaactccatgcgaga
atggaggggaatgtgaagatatcattggtcctccaaatagttacaactgcacatgtactc
cgcaatggactggatttaattgtacaattgacgttgatgaatgtgttgaagataccacat
tgtgcaaaacaaaagatccagatgcaacttgtgtgaatacaaatggaagttattattgtg
tctgcagtccaaacatgtttggaaaatcttgtctttttagtaattcagataaaatcattt
atcaaattttaaatgcaacttatggtgatcttggaccagataaactagatgagatggctc
aagagctgacaaatgatcctactctagtaagagatattgttccatttctgattggtggtt
acagtctggaagttagaactagtctttcctggactgcagcagatatgttcttgtgggttg
cctatgagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATGCGTTCCTACATACAACCT 460 351 1253 Antisense
ATACAACCTATTAGATTCCACGTTC 224 25 1269 Antisense
ATTCCACGTTCACTTGTCAATGTAC 460 5 1283 Antisense
GTGAAGATATCATTGGTCCTCCAAA 708 481 1385 Antisense
TGGTCCTCCAAATAGTTACAACTGC 272 551 1398 Antisense
ACAACTGCACATGTACTCCGCAATG 349 113 1415 Antisense
ATTGTGTCTGCAGTCCAAACATGTT 578 3 1547 Antisense
AGCTGACAAATGATCCTACTCTAGT 543 81 1676 Antisense
GAACTAGTCTTTCCTGGACTGCAGC 493 349 1748 Antisense
GGACTGCAGCAGATATGTTCTTGTG 469 523 1763 Antisense
TGTTCTTGTGGGTTGCCTATGAGCA 687 561 1778 Antisense
Sequence Source Affymetrix Proprietary Database