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[185101_at]

Description T28A11.6 /REP_DB=WormBase Gene ID /WP=CE14291 /TR=P91514 /GB=AAC48117.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 29.4
(-3)
A 		120.5
(1.1)
A 		163.5
(3)
A 		91.6
(-0.2)
A 		134
B 49.5
(-1.8)
A 		187.7
(2.8)
A 		192.8
(3)
A 		13
(-3)
A 		180
C 8.2
(-3)
A 		147.6
(3)
A 		126.3
(2.1)
A 		58.9
(-0.8)
A 		139
avr 29
(-3) 		151.9
(2.6) 		160.9
(3) 		54.5
(-1.8) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 21.9
(-2.8)
A 		116.4
(0)
A 		218.2
(3)
A 		218.6
(3)
A 		130.8
(0.4)
A 		13.6
(-3)
A 		205
B 30.2
(-3)
A 		221.8
(2.9)
A 		188.6
(1.9)
A 		224.5
(3)
A 		151.8
(0.8)
A 		42.4
(-2.6)
A 		194
C 7.9
(-3)
A 		184
(1.1)
A 		149.7
(0.3)
A 		264.8
(3)
A 		118.6
(-0.4)
A 		55.1
(-1.9)
A 		257
avr 20
(-3) 		174.1
(1.3) 		185.5
(1.6) 		236
(3) 		133.7
(0.2) 		37
(-2.5) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 10.7
(-3)
A 		26.1
(-0.1)
A 		42.7
(3)
A 		13.4
(-2.5)
A 		32
B 15.8
(-1.2)
A 		46.4
(3)
A 		44.7
(2.8)
A 		2.8
(-3)
A 		44
C 2.7
(-3)
A 		42.4
(2.8)
A 		44
(3)
A 		9.9
(-2)
A 		41
avr 9.7
(-2.8) 		38.3
(2.1) 		43.8
(3) 		8.7
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 4
(-2.9)
A 		41.4
(1.4)
A 		47.5
(2.1)
A 		55.4
(3)
A 		39.5
(1.2)
A 		3.3
(-3)
A 		52
B 10.5
(-3)
A 		73.8
(3)
A 		45.8
(0.3)
A 		59.5
(1.6)
A 		61.7
(1.9)
A 		15.8
(-2.5)
A 		63
C 2.9
(-3)
A 		56.1
(3)
A 		38.1
(1)
A 		53.2
(2.7)
A 		38.4
(1)
A 		18.5
(-1.2)
A 		53
avr 5.8
(-3) 		57.1
(3) 		43.8
(1.4) 		56
(2.9) 		46.5
(1.8) 		12.5
(-2.2) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15894
Sequence Type Exemplar sequence
Representative Public ID T28A11.6 NCBI
Target Description T28A11.6 /REP_DB=WormBase Gene ID /WP=CE14291 /TR=P91514 /GB=AAC48117.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071496 NCBI Caenorhabditis elegans T28A11.6 (T28A11.6) mRNA, complete cds. 11/11 None
T28A11.6 ENSEMBL cdna:known chromosome:CEL140:V:3262398:3262934:1 gene:T28A11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3262397-3262934(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28A11.6
Entrez Gene 189013 Entrez gene
SwissProt P91514 EMBL-EBI
WormBase CE14291 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503897 T28A11.6 [Caenorhabditis elegans] gb|AAC48117.1| Hypothetical protein T28A11.6 [Caenorhabditis elegans] 6.0E-70
blast AAF99935 Hypothetical protein F35F10.10 [Caenorhabditis elegans] ref|NP_503914.1| F35F10.10 [Caenorhabditis elegans] 2.0E-23
blast AAC04399 Hypothetical protein C17B7.5 [Caenorhabditis elegans] ref|NP_503925.1| C17B7.5 [Caenorhabditis elegans] 6.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503897.1 1 34-56
T28A11.6 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:185101_AT
tattctcaaaacgaccccttgttgttaggaaactcaaatagctcccaacaaaaagataat
tggaaaacaatagctaagatagctacagtattaattggaatcctgttcgtagcatcgcca
attgtttttggagtatccggagttgttggaaaaaataatgaacacaaacacggtacgcat
attaatattaccaagaccgcaaccaatccgttgatagtacacaatgtgggcactttctca
gtttcagttattcaaagtgagttgggaaaaatgtcgaattttgataacaagccctctagg
agcttttgtgaagctcctagagcgctggggtatgacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCTCAAAACGACCCCTTGTTGT 608 651 34 Antisense
GAAACTCAAATAGCTCCCAACAAAA 38 357 62 Antisense
GAACACAAACACGGTACGCATATTA 249 351 193 Antisense
ATATTACCAAGACCGCAACCAATCC 683 17 218 Antisense
GACCGCAACCAATCCGTTGATAGTA 27 383 228 Antisense
GTACACAATGTGGGCACTTTCTCAG 201 461 250 Antisense
GGCACTTTCTCAGTTTCAGTTATTC 251 535 262 Antisense
GTCGAATTTTGATAACAAGCCCTCT 167 471 306 Antisense
ACAAGCCCTCTAGGAGCTTTTGTGA 364 113 320 Antisense
GCTTTTGTGAAGCTCCTAGAGCGCT 447 305 335 Antisense
TCCTAGAGCGCTGGGGTATGACATC 144 591 348 Antisense
Sequence Source Affymetrix Proprietary Database