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[185100_at]

Description F55G11.10 /REP_DB=WormBase Gene ID /WP=CE18755 /TR=Q9XUD9 /GB=CAB05217.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 05      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 10.2
(-2.2)
A 		2.6
(-3)
A 		35.5
(0.5)
A 		59.1
(3)
A 		57
B 41.3
(3)
A 		34.7
(1.1)
A 		20.7
(-3)
A 		32.4
(0.4)
A 		21
C 55.7
(3)
P 		41.6
(0.1)
A 		26.5
(-3)
A 		41.6
(0.1)
A 		29
avr 35.7
(0.1) 		26.3
(-3) 		27.6
(-2.6) 		44.4
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 52
(3)
A 		18.8
(-1.1)
A 		20.7
(-0.9)
A 		3.4
(-3)
A 		37.9
(1.3)
A 		17.5
(-1.3)
A 		49
B 37.6
(2.8)
P 		16.9
(-1.3)
A 		8.1
(-3)
A 		38.4
(3)
A 		14.2
(-1.8)
A 		16.9
(-1.3)
A 		30
C 51.3
(2.7)
A 		53.8
(3)
A 		27
(-0.1)
A 		2.2
(-3)
A 		5.6
(-2.6)
A 		22.3
(-0.7)
A 		52
avr 47
(3) 		29.8
(-0.2) 		18.6
(-2.3) 		14.7
(-3) 		19.2
(-2.2) 		18.9
(-2.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.7
(-0.9)
A 		0.6
(-3)
A 		9.3
(3)
A 		8.6
(2.5)
A 		9
B 13.2
(3)
A 		8.6
(-0.3)
A 		4.8
(-3)
A 		6.9
(-1.5)
A 		8
C 18.5
(3)
P 		12
(-0.4)
A 		9.2
(-1.9)
A 		7
(-3)
A 		12
avr 11.8
(3) 		7.1
(-3) 		7.8
(-2.1) 		7.5
(-2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.6
(2)
A 		6.7
(0.3)
A 		4.5
(-0.9)
A 		0.9
(-3)
A 		11.4
(3)
A 		4.3
(-1.1)
A 		11
B 13.1
(3)
P 		5.6
(-1.1)
A 		2
(-3)
A 		10.2
(1.4)
A 		5.8
(-0.9)
A 		6.3
(-0.7)
A 		11
C 19
(3)
A 		16.4
(2.2)
A 		6.9
(-0.9)
A 		0.4
(-3)
A 		1.8
(-2.5)
A 		7.5
(-0.7)
A 		19
avr 13.9
(3) 		9.6
(0.4) 		4.5
(-2.6) 		3.8
(-3) 		6.3
(-1.5) 		6
(-1.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9245
Sequence Type Exemplar sequence
Representative Public ID F55G11.10 NCBI
Target Description F55G11.10 /REP_DB=WormBase Gene ID /WP=CE18755 /TR=Q9XUD9 /GB=CAB05217.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070076 NCBI Caenorhabditis elegans F55G11.10 (F55G11.10) mRNA, complete cds. 11/11 None
SNAP00000016139 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12948764:12950045:1 9/11 None
GENEFINDER00000016159 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12948740:12950227:1 11/11 None
F55G11.10 ENSEMBL cdna:known chromosome:CEL140:IV:12948740:12950227:1 gene:F55G11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12948745-12950233(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G11.10
Entrez Gene 186342 Entrez gene
SwissProt Q9XUD9 EMBL-EBI
WormBase CE18755 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05217 Hypothetical protein F55G11.10 [Caenorhabditis elegans] ref|NP_502477.1| F55G11.10 [Caenorhabditis elegans] 1.0E-158
blast CAB05217 Hypothetical protein F55G11.10 [Caenorhabditis elegans] ref|NP_502477.1| F55G11.10 [Caenorhabditis elegans] 1.0E-129
blast CAB04212 Hypothetical protein F28B1.5 [Caenorhabditis elegans] ref|NP_507320.1| F28B1.5 [Caenorhabditis elegans] 2.0E-21
blast CAB04212 Hypothetical protein F28B1.5 [Caenorhabditis elegans] ref|NP_507320.1| F28B1.5 [Caenorhabditis elegans] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:185100_AT
cagccgaactacagtggtgcaggtggtacaactgttgctatgccaaaagcattcggcgct
tgtgatatttacaaaccgacatgtcttctgaagaagattcctagttttctaactactatt
ttattgatgggagttccacaaagcgcaagcatgatatacagcgattttacctatgtgtca
ggcagatggtattataacaatgttccgcttccgagtttctataacaaccctgtggtacag
tgcaacgctgaggaaacgaagctaacagcaacttcacgtgttacgggatttaaacatagt
tactattgtggttgccgaggaatggaaaaggttccccctactcaggcagcgtcggttctc
atgaatttttatgaagctacaccgtattataatcttaagtatagagatgaaataataagc
tatgacgtttcaacatgtaccgccaaaatgtcttgcaccggaaatgatagcttgattctt
ttttctggatcattgaaaccagtaaagtttccaactggaactataaacctaacctgctct
acaactgctcgtaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCCGAACTACAGTGGTGCAGGTG 300 203 226 Antisense
GCATTCGGCGCTTGTGATATTTACA 27 309 274 Antisense
GGAGTTCCACAAAGCGCAAGCATGA 65 519 355 Antisense
ATAACAATGTTCCGCTTCCGAGTTT 493 23 419 Antisense
ACAGCAACTTCACGTGTTACGGGAT 36 109 490 Antisense
GCAGCGTCGGTTCTCATGAATTTTT 588 313 571 Antisense
GCTATGACGTTTCAACATGTACCGC 435 303 644 Antisense
TGTACCGCCAAAATGTCTTGCACCG 33 561 661 Antisense
GATAGCTTGATTCTTTTTTCTGGAT 447 425 691 Antisense
GAACTATAAACCTAACCTGCTCTAC 156 349 743 Antisense
CCTGCTCTACAACTGCTCGTAAATG 294 267 758 Antisense
Sequence Source Affymetrix Proprietary Database