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[185099_at]

Description C45H4.16 /REP_DB=WormBase Gene ID /WP=CE08749 /TR=O44700 /GB=AAC25879.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 32      6grp_total > 21      4grp_total > 13      6grp_cgc > 81      6grp_high1_sub > 02_03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 40.3
(0.7)
P 		6
(-3)
A 		11.3
(-2.4)
A 		61.7
(3)
A 		56
B 57.5
(3)
P 		33.1
(-0.4)
M 		14.7
(-3)
A 		32.3
(-0.5)
A 		43
C 63.8
(-1.3)
P 		43.7
(-2.3)
A 		28.5
(-3)
P 		152.4
(3)
P 		124
avr 53.9
(0.4) 		27.6
(-2.1) 		18.2
(-3) 		82.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 53.2
(0.3)
P 		36.3
(-3)
P 		67.3
(3)
P 		48
(-0.7)
A 		53.8
(0.4)
P 		59.2
(1.4)
A 		31
B 49.8
(1.8)
P 		54.1
(3)
P 		31.8
(-3)
P 		40
(-0.8)
P 		32.1
(-2.9)
P 		33.9
(-2.4)
P 		22
C 24.2
(-3)
P 		53
(2.4)
P 		56.2
(3)
P 		34.7
(-1)
A 		31.2
(-1.7)
P 		24.8
(-2.9)
P 		32
avr 42.4
(-1.4) 		47.8
(1.1) 		51.8
(3) 		40.9
(-2.1) 		39
(-3) 		39.3
(-2.9) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 14.7
(3)
P 		1.3
(-3)
A 		3
(-2.2)
A 		9
(0.4)
A 		13
B 18.3
(3)
P 		8.2
(-1.1)
M 		3.4
(-3)
A 		6.9
(-1.6)
A 		15
C 21.1
(1.3)
P 		12.6
(-2)
A 		9.9
(-3)
P 		25.7
(3)
P 		16
avr 18
(3) 		7.4
(-2) 		5.4
(-3) 		13.9
(1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.8
(-3)
P 		12.9
(-0.1)
P 		14.7
(1.6)
P 		12.2
(-0.8)
A 		16.2
(3)
P 		14.4
(1.3)
A 		6
B 17.3
(2.6)
P 		18
(3)
P 		7.7
(-3)
P 		10.6
(-1.3)
P 		13
(0.1)
P 		12.6
(-0.1)
P 		10
C 9
(-1.7)
P 		16.2
(3)
P 		14.3
(1.8)
P 		7
(-3)
A 		10.1
(-1)
P 		8.3
(-2.2)
P 		9
avr 12
(-0.8) 		15.7
(3) 		12.2
(-0.6) 		9.9
(-3) 		13.1
(0.3) 		11.8
(-1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15582
Sequence Type Exemplar sequence
Representative Public ID C45H4.16 NCBI
Target Description C45H4.16 /REP_DB=WormBase Gene ID /WP=CE08749 /TR=O44700 /GB=AAC25879.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071187(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071187 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-19) (srbc-19) mRNA, complete cds. 11/11 None
GENEFINDER00000009358 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2164654:2166607:-1 11/11 None
C45H4.16 ENSEMBL cdna:known chromosome:CEL140:V:2164654:2166607:-1 gene:C45H4.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009345 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2164653-2166607(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-19
Ensembl C45H4.16
Entrez Gene 183496 Entrez gene
SwissProt O44700 EMBL-EBI
WormBase CE08749 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25879 Serpentine receptor, class bc (class b-like) protein 19 [Caenorhabditis elegans] ref|NP_503588.1| Serpentine Receptor, class BC (class B-like) family member (srbc-19) [Caenorhabditis elegans] 1.0E-166
blast CAE74168 Hypothetical protein CBG21841 [Caenorhabditis briggsae] 2.0E-84
blast CAE74165 Hypothetical protein CBG21838 [Caenorhabditis briggsae] 4.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.0E-119
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503588.1 6 13-35,55-74,128-150,183-205,218-237,252-274
C45H4.16 6 13-35,55-74,128-150,183-205,218-237,252-274
GENEFINDER00000009358 6 13-35,55-74,128-150,183-205,218-237,252-274
Sequence
Target Sequence 
>C. ELEGANS:185099_AT
gagagtagcggctgcgtacattccaattttctttcacaactaccgcaaacgttttcccgc
cgtcataattttcatgatcgcagtgatctacgggctaaatgaggatatagttttatatgt
gttttgcaattttaagctcaacatcccaaaaaactgtgcagctttgggctgtgcgatgaa
tacgtgtttctttcactattggacccatcaaaaatctgtaacgtttaccatcaccttcgt
gtgcttattgcttctttgtgctaaactttttattttcaatgagctcgggaggaacgggag
gaaggaattgtcaagggtgaaccgcctggcactcatcgactcaacaatcgtctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGTAGCGGCTGCGTACATTCCA 344 395 339 Antisense
TTCCAATTTTCTTTCACAACTACCG 236 699 359 Antisense
TTTTCCCGCCGTCATAATTTTCATG 234 677 390 Antisense
ATCGCAGTGATCTACGGGCTAAATG 536 35 415 Antisense
TGCAATTTTAAGCTCAACATCCCAA 209 577 463 Antisense
AACTGTGCAGCTTTGGGCTGTGCGA 350 143 490 Antisense
GTGTTTCTTTCACTATTGGACCCAT 414 485 522 Antisense
TTTACCATCACCTTCGTGTGCTTAT 118 675 562 Antisense
GTGTGCTTATTGCTTCTTTGTGCTA 704 487 577 Antisense
TTGTCAAGGGTGAACCGCCTGGCAC 394 701 646 Antisense
ACTCATCGACTCAACAATCGTCTGT 359 101 669 Antisense
Sequence Source Affymetrix Proprietary Database