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[185098_s_at]

Description Y64G10A.6 /REP_DB=WormBase Gene ID /WP=CE22716 /TR=Q9NA64 /GB=CAB54470.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 60      6grp_total > 26      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 513
1 2 3 4 range
A 630.7
(2.8)
P 		449.6
(0.1)
P 		245.3
(-3)
P 		644.3
(3)
P 		399
B 723.7
(2.6)
P 		345
(-2.1)
P 		275.2
(-3)
P 		758.7
(3)
P 		484
C 684.8
(3)
P 		387.5
(-1.8)
P 		314.8
(-3)
P 		678.4
(2.9)
P 		370
avr 679.7
(2.8) 		394
(-1.3) 		278.4
(-3) 		693.8
(3) 		415

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 480
(0.8)
P 		581.7
(3)
P 		387.8
(-1.2)
P 		303.9
(-3)
P 		357.2
(-1.8)
P 		339.7
(-2.2)
P 		278
B 626.2
(3)
P 		521.2
(0.9)
P 		330.7
(-3)
P 		382.5
(-1.9)
P 		366.8
(-2.3)
P 		415.7
(-1.3)
P 		296
C 657.4
(3)
P 		474.4
(0.3)
P 		361.7
(-1.3)
P 		244.8
(-3)
P 		371.2
(-1.2)
P 		422.8
(-0.4)
P 		413
avr 587.9
(3) 		525.8
(1.7) 		360.1
(-1.9) 		310.4
(-3) 		365.1
(-1.8) 		392.7
(-1.2) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 229.6
(3)
P 		97.6
(-1.8)
P 		64.1
(-3)
P 		94.3
(-1.9)
P 		166
B 230.8
(3)
P 		85.2
(-2.2)
P 		63.8
(-3)
P 		161.7
(0.5)
P 		167
C 226.7
(3)
P 		111.4
(-2.9)
P 		109.7
(-3)
P 		114.4
(-2.8)
P 		117
avr 229
(3) 		98.1
(-2.2) 		79.2
(-3) 		123.5
(-1.2) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 88.5
(-2.5)
P 		206.9
(3)
P 		84.4
(-2.7)
P 		77.1
(-3)
P 		107.8
(-1.6)
P 		82.7
(-2.7)
P 		130
B 217.9
(3)
P 		173.5
(1.1)
P 		80.3
(-3)
P 		101.3
(-2.1)
P 		149
(-0)
P 		155
(0.3)
P 		138
C 243.7
(3)
P 		144.7
(-0.1)
P 		92.1
(-1.7)
P 		49.2
(-3)
P 		120.1
(-0.8)
P 		141.5
(-0.2)
P 		195
avr 183.4
(3) 		175
(2.5) 		85.6
(-2.5) 		75.9
(-3) 		125.6
(-0.2) 		126.4
(-0.2) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185098_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8485
Sequence Type Exemplar sequence
Representative Public ID Y64G10A.6 NCBI
Target Description Y64G10A.6 /REP_DB=WormBase Gene ID /WP=CE22716 /TR=Q9NA64 /GB=CAB54470.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070335 NCBI Caenorhabditis elegans Y64G10A.6 (Y64G10A.6) mRNA, complete cds. 11/11 None
SNAP00000010755 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14276557:14284309:1 10/11 None
GENEFINDER00000010762 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14276119:14285171:1 11/11 None
Y64G10A.6 ENSEMBL cdna:known chromosome:CEL140:IV:14276557:14285478:1 gene:Y64G10A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14276562-14285177(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y64G10A.6
Entrez Gene 178376 Entrez gene
SwissProt Q9NA64 EMBL-EBI
WormBase CE22716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54470 Hypothetical protein Y64G10A.6 [Caenorhabditis elegans] ref|NP_502736.1| Y64G10A.6 [Caenorhabditis elegans] 0.0
blast CAE71750 Hypothetical protein CBG18736 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502736.1 1 417-439
Y64G10A.6 1 417-439
SNAP00000010755 1 413-435
GENEFINDER00000010762 1 470-492
Sequence
Target Sequence 
>C. ELEGANS:185098_S_AT
ctcatcatagagttgccacgcgtagagttagtgagttggaagctcataatattgtgccat
tgccaccaagtttggaagtaaaagttgaagatgaggatgccttcggtcaaatggaaactt
tgccgattgacgaactcaaggagaagtttgctgcaaagagagatcttgaagtggaagttc
tggactctgaagacgttaagcttctggaagacgttaaatgtgctccgggaccaattcatg
tggagccaacggaacctgaagttttggaacctgctgaagaacccatggaagaagctgaag
aagatgaggaagatgaagatgacgtggattcagttgaaggacagactgctcgaatcgagg
agttacagagattgatagttcacaaggatatgaatcatgactcgggaaatttggattcag
catatgtcagtggatccgacttttcggcggatatacataatgaaattctggacaaacctc
ggctaaatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATCATAGAGTTGCCACGCGTAG 274 229 1994 Antisense
GAAGCTCATAATATTGTGCCATTGC 128 343 2032 Antisense
GTGCCATTGCCACCAAGTTTGGAAG 343 475 2047 Antisense
ATGAGGATGCCTTCGGTCAAATGGA 370 45 2084 Antisense
AACTTTGCCGATTGACGAACTCAAG 454 137 2109 Antisense
GAAGACGTTAAATGTGCTCCGGGAC 614 325 2200 Antisense
GTGCTCCGGGACCAATTCATGTGGA 212 479 2213 Antisense
GGAGCCAACGGAACCTGAAGTTTTG 622 521 2235 Antisense
GAAGGACAGACTGCTCGAATCGAGG 330 333 2329 Antisense
GTCAGTGGATCCGACTTTTCGGCGG 44 467 2419 Antisense
TCTGGACAAACCTCGGCTAAATGCA 238 607 2460 Antisense
Sequence Source Affymetrix Proprietary Database