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[185097_at]

Description Y116A8C.5 /REP_DB=WormBase Gene ID /WP=CE23316 /TR=Q9U2T0 /GB=CAB55147.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 18.9
(-1.7)
A 		5.2
(-3)
A 		6.2
(-2.9)
A 		70
(3)
A 		65
B 5.3
(-2.3)
A 		7.3
(2.5)
A 		7.5
(3)
A 		5
(-3)
A 		3
C 21.1
(0.6)
A 		3
(-3)
A 		5.8
(-2.4)
A 		33.2
(3)
A 		30
avr 15.1
(-1.1) 		5.2
(-3) 		6.5
(-2.7) 		36.1
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 17.1
(1.3)
A 		5.1
(-2.1)
A 		4.1
(-2.4)
A 		9
(-1)
A 		23.1
(3)
A 		2
(-3)
A 		21
B 7.2
(-1.7)
A 		11.6
(1.8)
A 		5.7
(-2.9)
A 		13.1
(3)
A 		6.1
(-2.6)
A 		5.6
(-3)
A 		8
C 7.1
(-1.8)
A 		6.9
(-1.9)
A 		23.6
(3)
A 		18.9
(1.6)
A 		5.3
(-2.3)
A 		3
(-3)
A 		21
avr 10.5
(1.1) 		7.9
(-0.4) 		11.1
(1.5) 		13.7
(3) 		11.5
(1.7) 		3.5
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.9
(0.8)
A 		1.1
(-3)
A 		1.6
(-2.7)
A 		10.3
(3)
A 		9
B 1.7
(2.1)
A 		1.8
(3)
A 		1.7
(2.1)
A 		1.1
(-3)
A 		1
C 7
(3)
A 		0.9
(-3)
A 		2
(-1.9)
A 		5.6
(1.6)
A 		6
avr 5.2
(2.3) 		1.3
(-3) 		1.8
(-2.3) 		5.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.2
(-0.5)
A 		1.8
(-1.8)
A 		0.9
(-2.6)
A 		2.3
(-1.3)
A 		7
(3)
A 		0.5
(-3)
A 		7
B 2.5
(-0.4)
A 		3.9
(3)
A 		1.4
(-3)
A 		3.5
(2)
A 		2.5
(-0.4)
A 		2.1
(-1.3)
A 		3
C 2.6
(-1.1)
A 		2.1
(-1.7)
A 		6
(3)
A 		3.8
(0.4)
A 		1.7
(-2.2)
A 		1
(-3)
A 		5
avr 2.8
(0.8) 		2.6
(0.4) 		2.8
(0.8) 		3.2
(1.8) 		3.7
(3) 		1.2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9107
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.5 NCBI
Target Description Y116A8C.5 /REP_DB=WormBase Gene ID /WP=CE23316 /TR=Q9U2T0 /GB=CAB55147.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070604 NCBI Caenorhabditis elegans Y116A8C.5 (Y116A8C.5) mRNA, complete cds. 11/11 None
SNAP00000004074 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16924351:16927146:1 11/11 None
GENEFINDER00000004174 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16924351:16927146:1 11/11 None
Y116A8C.5 ENSEMBL cdna:known chromosome:CEL140:IV:16924351:16927146:1 gene:Y116A8C.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16924356-16927152(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.5
Entrez Gene 190993 Entrez gene
SwissProt Q9U2T0 EMBL-EBI
WormBase CE23316 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4245 neprilysin activity inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55147 Hypothetical protein Y116A8C.5 [Caenorhabditis elegans] ref|NP_503005.1| Y116A8C.5 [Caenorhabditis elegans] 0.0
blast CAB55146 Hypothetical protein Y116A8C.4 [Caenorhabditis elegans] ref|NP_503004.1| Y116A8C.4 [Caenorhabditis elegans] 1.0E-142
blast CAB55146 Hypothetical protein Y116A8C.4 [Caenorhabditis elegans] ref|NP_503004.1| Y116A8C.4 [Caenorhabditis elegans] 1.0E-141
blast AAB66080 Hypothetical protein F18A12.1 [Caenorhabditis elegans] ref|NP_494537.1| F18A12.1 [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 1.2E-12
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 1.7E-29
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 9.2E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503005.1 1 12-34
Y116A8C.5 1 12-34
SNAP00000004074 1 12-34
GENEFINDER00000004174 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:185097_AT
agaagtgccgtactatccattgttcccgggacttatgactaatgccatgtataacgcgaa
tgataataatctaatgatctttgccccattcttcgatgatccatttttcgactctagttt
cccggactatgcaaacatcgcattcacttcgaacacacttgctcatgaaatgggacacac
tttcagcccgcatttgatggatataatgactggtacaacagaagtttggctaacaccgaa
ggagacagaggagtacgaaaagaggtataatggatcgatggtgatcgatgagatagtagc
agatcggattgcaattgatgttaattggagggatttcaagagttcggatcgatcgaagga
tcagaagatcattggattcgaggactacaatctggaccaactgttcttccgtatttcagc
tatgagcttctgtacgccggctccactttcgctagaagtgtctaaggcttccaaccatcc
ggcgtttgccttccgtgtcaatggagtttttcagaacgtgccagaatttgcgaagacatt
caactgcccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTGCCGTACTATCCATTGTTC 131 75 1374 Antisense
GTTCCCGGGACTTATGACTAATGCC 259 441 1395 Antisense
AATCTAATGATCTTTGCCCCATTCT 522 169 1441 Antisense
GATCCATTTTTCGACTCTAGTTTCC 30 417 1471 Antisense
GCATTCACTTCGAACACACTTGCTC 59 309 1513 Antisense
CACTTTCAGCCCGCATTTGATGGAT 85 197 1551 Antisense
CAATCTGGACCAACTGTTCTTCCGT 542 181 1761 Antisense
GTTCTTCCGTATTTCAGCTATGAGC 595 443 1776 Antisense
TCAGCTATGAGCTTCTGTACGCCGG 496 625 1789 Antisense
GAAGTGTCTAAGGCTTCCAACCATC 361 335 1828 Antisense
TTGCGAAGACATTCAACTGCCCGCT 46 695 1901 Antisense
Sequence Source Affymetrix Proprietary Database