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[185096_at]

Description Y71H2B.6 /REP_DB=WormBase Gene ID /WP=CE22945 /TR=Q9N4F2 /GB=AAF36035.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 95      6grp_total > 76      4grp_total > 16      6grp_highest_sub > In      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 597.2
(-2.1)
P 		544.8
(-3)
P 		606.4
(-1.9)
P 		890.2
(3)
P 		345
B 500.2
(-3)
P 		644
(-0.6)
P 		613.5
(-1.1)
P 		859
(3)
P 		359
C 537.4
(-3)
P 		597
(-1.1)
P 		643
(0.4)
P 		722.5
(3)
P 		185
avr 544.9
(-3) 		595.3
(-1.9) 		621
(-1.4) 		823.9
(3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 762
1 2 3 4 5 6 range
A 523.2
(-3)
P 		532.2
(-2.8)
P 		747.9
(0.8)
P 		876.1
(3)
P 		641.9
(-1)
P 		733.7
(0.6)
P 		353
B 643.2
(-2.9)
P 		628.3
(-3)
P 		641.4
(-2.9)
P 		697.3
(-2.3)
P 		828.2
(-1.1)
P 		1244.6
(3)
P 		616
C 489.2
(-3)
P 		677.6
(-1.5)
P 		592.9
(-2.2)
P 		888.7
(0.1)
P 		690.1
(-1.4)
P 		1250.9
(3)
P 		762
avr 551.9
(-3) 		612.7
(-2.3) 		660.7
(-1.8) 		820.7
(0.1) 		720.1
(-1.1) 		1076.4
(3) 		525
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 217.5
(3)
P 		118.3
(-3)
P 		158.5
(-0.6)
P 		130.3
(-2.3)
P 		99
B 159.5
(-0.5)
P 		159
(-0.5)
P 		142.2
(-3)
P 		183
(3)
P 		41
C 177.9
(0.3)
P 		171.6
(-0.1)
P 		224.1
(3)
P 		121.8
(-3)
P 		102
avr 185
(3) 		149.6
(-2.3) 		174.9
(1.5) 		145
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 96.5
(-3)
P 		189.3
(1.4)
P 		162.9
(0.2)
P 		222.2
(3)
P 		193.7
(1.6)
P 		178.6
(0.9)
P 		126
B 223.8
(-1.7)
P 		209.1
(-2)
P 		155.8
(-3)
P 		184.7
(-2.4)
P 		336.5
(0.5)
P 		464.1
(3)
P 		308
C 181.3
(-2.3)
P 		206.8
(-1.7)
P 		150.9
(-3)
P 		178.7
(-2.4)
P 		223.3
(-1.4)
P 		418.7
(3)
P 		268
avr 167.2
(-2.7) 		201.7
(-1.6) 		156.5
(-3) 		195.2
(-1.8) 		251.2
(-0.1) 		353.8
(3) 		197
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6526
Sequence Type Exemplar sequence
Representative Public ID Y71H2B.6 NCBI
Target Description Y71H2B.6 /REP_DB=WormBase Gene ID /WP=CE22945 /TR=Q9N4F2 /GB=AAF36035.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065186 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-19) (mdt-19) mRNA, complete cds. 11/11 None
SNAP00000014008 ENSEMBL cdna:SNAP chromosome:CEL140:III:2586580:2603120:1 10/11 None
GENEFINDER00000014043 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2598050:2601319:1 9/11 None
Y71H2B.6 ENSEMBL cdna:known chromosome:CEL140:III:2598050:2603139:1 gene:Y71H2B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2598049-2599543(+) 90.83 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mdt-19
Ensembl Y71H2B.6
Entrez Gene 175378 Entrez gene
SwissProt Q9N4F2 EMBL-EBI
WormBase CE22945 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36036 Hypothetical protein Y71H2B.7 [Caenorhabditis elegans] ref|NP_497585.1| Y71H2B.7 [Caenorhabditis elegans] 0.0
blast CAE64988 Hypothetical protein CBG09823 [Caenorhabditis briggsae] 0.0
blast AAF36035 Mediator protein 19 [Caenorhabditis elegans] ref|NP_497587.1| MeDiaTor family member (mdt-19) [Caenorhabditis elegans] 3.0E-93
blast AAF36035 Mediator protein 19 [Caenorhabditis elegans] ref|NP_497587.1| MeDiaTor family member (mdt-19) [Caenorhabditis elegans] 3.0E-71
blast AAF36035 Mediator protein 19 [Caenorhabditis elegans] ref|NP_497587.1| MeDiaTor family member (mdt-19) [Caenorhabditis elegans] 3.0E-63
blast CAG04778 unnamed protein product [Tetraodon nigroviridis] 1.0E-16
blast AAT68059 LCMR1-like [Danio rerio] ref|XP_700501.1| PREDICTED: similar to LCMR1-like [Danio rerio] 2.0E-16
Sequence
Target Sequence 
>C. ELEGANS:185096_AT
tctacttccaccgtacagcgaaattcagggaaatcacgatcttctcatgtcgtacgagct
cgggcctgttgagggaggattcagtggtagcagacgagttaaggagaaaatctcctcgtt
tttgccgcatataatcggcgaatttcacttggacgcgacgaaagaggcgagctcactgcg
agctctcatcgaaaaaccgccgattcacaaggaaatttcgaatttgacgagctcttcgat
gcagggattcaagctttctgctgggcccgtcgatgaaagatatcgccacctattcgagcg
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACTTCCACCGTACAGCGAAATT 512 613 93 Antisense
GATCTTCTCATGTCGTACGAGCTCG 450 419 130 Antisense
GAGCTCGGGCCTGTTGAGGGAGGAT 163 387 148 Antisense
TCTCCTCGTTTTTGCCGCATATAAT 138 611 203 Antisense
GGCGAATTTCACTTGGACGCGACGA 645 537 229 Antisense
AGAGGCGAGCTCACTGCGAGCTCTC 67 69 255 Antisense
CGAGCTCTCATCGAAAAACCGCCGA 155 251 271 Antisense
GACGAGCTCTTCGATGCAGGGATTC 308 379 318 Antisense
CAGGGATTCAAGCTTTCTGCTGGGC 110 209 334 Antisense
CTGCTGGGCCCGTCGATGAAAGATA 483 237 350 Antisense
AAGATATCGCCACCTATTCGAGCGC 471 155 369 Antisense
Sequence Source Affymetrix Proprietary Database