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[185095_at]

Description F46F5.11 /REP_DB=WormBase Gene ID /WP=CE19427 /TR=Q9TXX9 /GB=AAC78189.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 2.2
(-3)
A 		25.2
(-0.8)
A 		5.4
(-2.7)
A 		65.5
(3)
A 		63
B 23.7
(-3)
A 		29.8
(3)
A 		26.3
(-0.4)
A 		29.8
(3)
A 		6
C 30.1
(0.8)
A 		21.3
(-0.6)
A 		6.4
(-3)
A 		44.2
(3)
A 		38
avr 18.7
(-1.9) 		25.4
(-0.7) 		12.7
(-3) 		46.5
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 35.2
(2.8)
A 		17.5
(-2.4)
A 		31.4
(1.7)
P 		20.3
(-1.6)
M 		15.5
(-3)
A 		36
(3)
A 		21
B 21.3
(2.8)
A 		20.7
(2.6)
P 		5.2
(-1.9)
A 		21.9
(3)
A 		1.5
(-3)
A 		13.9
(0.6)
P 		20
C 5.5
(-2.8)
A 		30.6
(1.4)
A 		28
(1)
M 		40.1
(3)
P 		4.2
(-3)
A 		16.8
(-0.9)
A 		36
avr 20.7
(1) 		22.9
(1.7) 		21.5
(1.3) 		27.4
(3) 		7.1
(-3) 		22.2
(1.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-3)
A 		5.5
(0.2)
A 		1.4
(-2.6)
A 		9.6
(3)
A 		9
B 7.6
(3)
A 		7.4
(2.2)
A 		6.1
(-3)
A 		6.4
(-1.8)
A 		2
C 10
(3)
A 		6.1
(-0)
A 		2.2
(-3)
A 		7.5
(1.1)
A 		8
avr 6.1
(0.8) 		6.3
(1) 		3.2
(-3) 		7.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.5
(-0.4)
A 		6.2
(-0.8)
A 		6.8
(0.1)
P 		5.1
(-2.4)
M 		4.7
(-3)
A 		8.8
(3)
A 		4
B 7.4
(3)
A 		6.9
(2.6)
P 		1.3
(-2.4)
A 		5.8
(1.6)
A 		0.6
(-3)
A 		5.2
(1.1)
P 		7
C 2
(-2.5)
A 		9.3
(3)
A 		7.1
(1.3)
M 		8.1
(2.1)
P 		1.4
(-3)
A 		5.6
(0.2)
A 		8
avr 5.3
(0.5) 		7.5
(3) 		5.1
(0.3) 		6.3
(1.6) 		2.2
(-3) 		6.5
(1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4642
Sequence Type Exemplar sequence
Representative Public ID F46F5.11 NCBI
Target Description F46F5.11 /REP_DB=WormBase Gene ID /WP=CE19427 /TR=Q9TXX9 /GB=AAC78189.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061416(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061416 NCBI Caenorhabditis elegans F46F5.11 (F46F5.11) mRNA, complete cds. 11/11 None
SNAP00000029521 ENSEMBL cdna:SNAP chromosome:CEL140:II:808768:811893:1 11/11 None
GENEFINDER00000029540 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:808763:811893:1 11/11 None
F46F5.11 ENSEMBL cdna:known chromosome:CEL140:II:808763:811893:1 gene:F46F5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:808762-811893(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F5.11
Entrez Gene 185864 Entrez gene
SwissProt Q9TXX9 EMBL-EBI
WormBase CE19427 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78189 Hypothetical protein F46F5.11 [Caenorhabditis elegans] ref|NP_493817.1| F46F5.11 [Caenorhabditis elegans] 0.0
blast AAK68610 Hypothetical protein ZK105.3 [Caenorhabditis elegans] 0.0
blast NP_504993 ZK105.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493817.1 1 7-24
F46F5.11 1 7-24
GENEFINDER00000029540 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:185095_AT
catttgcatggttcttacaatactgagaatgaatggcattttcgagatcatggtggacaa
cgagtcgtgactattttgaaagcaatcaagagcacaactgacaagaagcttctagctgcc
tgggacagatttgacaaaggattgcaaaaatatggatactacaacgaaacagataacgca
gaagaacagatgaaaagtccaattggcaagagtatttctgatttctactatataccaaca
tctgaaagtgaatattacgctcatctcatgcgattattctatgacaatcagttattcttg
gaaattgctgttaatcggtttttgagatctgttaaccattcaacatcactctatgcaaaa
acttgttatctatggggaaatcgtgcaaaatgggatacagtttaccacaaggatatggtt
gcaatgcatcctgttaaaattagtcaatttatgaaaccgggtgaagcaaggaaaaggtac
tgcgcttcaatattacaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTGCATGGTTCTTACAATACTG 699 213 1813 Antisense
GAATGGCATTTTCGAGATCATGGTG 178 333 1843 Antisense
TCATGGTGGACAACGAGTCGTGACT 576 621 1860 Antisense
GCACAACTGACAAGAAGCTTCTAGC 97 317 1904 Antisense
AGCTTCTAGCTGCCTGGGACAGATT 424 79 1919 Antisense
ATTTCTACTATATACCAACATCTGA 191 17 2033 Antisense
GCTCATCTCATGCGATTATTCTATG 424 301 2071 Antisense
GAAATTGCTGTTAATCGGTTTTTGA 226 363 2113 Antisense
AACCATTCAACATCACTCTATGCAA 696 147 2146 Antisense
GGGATACAGTTTACCACAAGGATAT 654 493 2204 Antisense
GGTACTGCGCTTCAATATTACAAAC 217 505 2288 Antisense
Sequence Source Affymetrix Proprietary Database