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[185094_at]

Description Y75B8A.17 /REP_DB=WormBase Gene ID /WP=CE23028 /TR=Q9XW85 /GB=CAA22084.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 10      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 19.7
(-3)
A 		20
(-3)
A 		33.2
(-1.7)
A 		82.6
(3)
A 		63
B 58.7
(0.3)
A 		8
(-3)
A 		13.9
(-2.6)
A 		99.4
(3)
A 		91
C 8.7
(-3)
A 		71.4
(1.7)
A 		23.2
(-1.9)
A 		88.5
(3)
A 		80
avr 29
(-2.5) 		33.1
(-2.1) 		23.4
(-3) 		90.2
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 25.3
(-1.7)
A 		4
(-3)
A 		20.7
(-2)
A 		49.8
(-0.3)
A 		50.7
(-0.2)
A 		105.6
(3)
A 		102
B 4.9
(-3)
A 		4.1
(-3)
A 		13.3
(-2.6)
A 		10.7
(-2.7)
A 		10.2
(-2.8)
A 		159.6
(3)
A 		156
C 8.8
(-3)
A 		13.1
(-2.8)
A 		20.8
(-2.5)
A 		80.7
(-0.1)
A 		22.6
(-2.4)
A 		158.7
(3)
A 		150
avr 13
(-2.7) 		7.1
(-3) 		18.3
(-2.5) 		47.1
(-1.2) 		27.8
(-2.1) 		141.3
(3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7.2
(-0.8)
A 		4.3
(-3)
A 		8.7
(0.4)
A 		12.1
(3)
A 		8
B 18.7
(2.2)
A 		2
(-3)
A 		3.2
(-2.6)
A 		21.2
(3)
A 		19
C 2.9
(-3)
A 		20.5
(3)
A 		8.1
(-1.2)
A 		14.9
(1.1)
A 		18
avr 9.6
(-1.1) 		8.9
(-1.6) 		6.7
(-3) 		16.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 4.7
(-2.2)
A 		1.4
(-3)
A 		4.5
(-2.2)
A 		12.6
(-0.2)
A 		15.3
(0.4)
A 		25.7
(3)
A 		24
B 1.7
(-3)
A 		1.3
(-3)
A 		3.2
(-2.8)
A 		2.8
(-2.8)
A 		4.1
(-2.7)
A 		59.5
(3)
A 		58
C 3.3
(-3)
A 		4
(-2.9)
A 		5.3
(-2.8)
A 		16.2
(-1.4)
A 		7.3
(-2.5)
A 		53.1
(3)
A 		50
avr 3.2
(-2.9) 		2.2
(-3) 		4.3
(-2.7) 		10.5
(-1.9) 		8.9
(-2.1) 		46.1
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8077
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.17 NCBI
Target Description Y75B8A.17 /REP_DB=WormBase Gene ID /WP=CE23028 /TR=Q9XW85 /GB=CAA22084.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067188(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067188 NCBI Caenorhabditis elegans GeMiNin homolog family member (gmn-1) (gmn-1) mRNA, complete cds. 11/11 None
SNAP00000020083 ENSEMBL cdna:SNAP chromosome:CEL140:III:12224508:12235524:-1 11/11 None
GENEFINDER00000020178 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12224508:12225206:-1 11/11 None
Y75B8A.17 ENSEMBL cdna:known chromosome:CEL140:III:12224508:12225206:-1 gene:Y75B8A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12224503-12225202(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gmn-1
Ensembl Y75B8A.17
Entrez Gene 176651 Entrez gene
SwissProt Q9XW85 EMBL-EBI
WormBase CE23028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22084 Hypothetical protein Y75B8A.17 [Caenorhabditis elegans] ref|NP_499589.1| GeMiNin homolog family member (gmn-1) [Caenorhabditis elegans] dbj|BAD98298.1| geminin homolog [Caenorhabditis elegans] 8.0E-89
blast CAA22084 Hypothetical protein Y75B8A.17 [Caenorhabditis elegans] ref|NP_499589.1| GeMiNin homolog family member (gmn-1) [Caenorhabditis elegans] dbj|BAD98298.1| geminin homolog [Caenorhabditis elegans] 4.0E-88
blast CAA22086 Hypothetical protein Y75B8A.20 [Caenorhabditis elegans] ref|NP_499592.1| GRound-Like (grd related) family member (grl-15) [Caenorhabditis elegans] 6.0E-62
blast CAE56552 Hypothetical protein CBG24285 [Caenorhabditis briggsae] 3.0E-47
blast CAE75121 Hypothetical protein CBG23049 [Caenorhabditis briggsae] 6.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 6.6E-27
Sequence
Target Sequence 
>C. ELEGANS:185094_AT
tgagcagaatcggccttcaacagctcaacaactcggcacgcaacagtccatttggctccg
agaaggccaccggcaccaagcaaattccagaaccgctgaagctcaccgcccaactcaaga
aatatcagccaatcacaccgtccccgctggcttctgccaccacaatcacaccggttttat
ctccattcgacgtgttctgtgatgatgatcaagaggcaaaaaacgtggagacgcagatgt
ttgagtacggcacagtgtccacgcaaacgatcatcaacgtcccacacgttcaaccaaaaa
tcacagaagccgatctaacatctgaaaaaccaactgtaaactatcttcgcgtgatggctg
accgtctgcaaatggatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCAGAATCGGCCTTCAACAGCT 622 565 14 Antisense
TTCAACAGCTCAACAACTCGGCACG 270 685 29 Antisense
CAACAGTCCATTTGGCTCCGAGAAG 77 189 54 Antisense
CTCACCGCCCAACTCAAGAAATATC 664 227 115 Antisense
AGAAATATCAGCCAATCACACCGTC 107 73 131 Antisense
ACAATCACACCGGTTTTATCTCCAT 325 115 175 Antisense
TTATCTCCATTCGACGTGTTCTGTG 495 679 190 Antisense
TTGAGTACGGCACAGTGTCCACGCA 519 705 254 Antisense
GTGTCCACGCAAACGATCATCAACG 691 487 268 Antisense
AAACTATCTTCGCGTGATGGCTGAC 562 127 351 Antisense
GGCTGACCGTCTGCAAATGGATCTG 393 539 369 Antisense
Sequence Source Affymetrix Proprietary Database