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[185093_at]

Description C02A12.6 /REP_DB=WormBase Gene ID /WP=CE07830 /TR=O16204 /GB=AAB65269.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 19      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 17.9
(0.4)
A 		26.2
(2.3)
A 		3.2
(-3)
A 		29.3
(3)
A 		26
B 1.7
(-3)
A 		19.5
(2.3)
A 		3
(-2.6)
A 		22
(3)
A 		20
C 5.5
(-2.5)
A 		3.9
(-2.7)
A 		2
(-3)
A 		41.6
(3)
A 		40
avr 8.4
(-1.8) 		16.5
(-0.1) 		2.7
(-3) 		31
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 6.6
(-2.2)
A 		2.8
(-2.8)
A 		7.8
(-2)
A 		37.8
(3)
A 		2.2
(-2.9)
A 		1.5
(-3)
A 		36
B 4.5
(-2)
A 		2.3
(-3)
A 		15.1
(3)
A 		2.4
(-3)
A 		4.2
(-2.1)
A 		9.7
(0.5)
A 		13
C 1.7
(-2.8)
A 		7.2
(-1)
A 		2.4
(-2.6)
A 		19.8
(3)
A 		1.1
(-3)
A 		7.3
(-1)
A 		19
avr 4.3
(-2.4) 		4.1
(-2.5) 		8.4
(-1) 		20
(3) 		2.5
(-3) 		6.2
(-1.7) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.5
(3)
A 		5.7
(2.2)
A 		0.8
(-3)
A 		4.3
(0.7)
A 		6
B 0.5
(-3)
A 		4.8
(3)
A 		0.7
(-2.7)
A 		4.7
(2.9)
A 		4
C 1.8
(-2)
A 		1.1
(-2.6)
A 		0.7
(-3)
A 		7
(3)
A 		6
avr 2.9
(-0.1) 		3.9
(1.2) 		0.7
(-3) 		5.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.2
(-2.5)
A 		1
(-2.6)
A 		1.7
(-2.2)
A 		9.6
(3)
A 		0.7
(-2.8)
A 		0.4
(-3)
A 		9
B 1.6
(-1.1)
A 		0.8
(-2.6)
A 		3.7
(3)
A 		0.6
(-3)
A 		1.7
(-0.9)
A 		3.6
(2.8)
A 		3
C 0.6
(-2.7)
A 		2.2
(0)
A 		0.6
(-2.7)
A 		4
(3)
A 		0.4
(-3)
A 		2.4
(0.3)
A 		4
avr 1.1
(-2.7) 		1.3
(-2.4) 		2
(-1.3) 		4.7
(3) 		0.9
(-3) 		2.1
(-1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15525
Sequence Type Exemplar sequence
Representative Public ID C02A12.6 NCBI
Target Description C02A12.6 /REP_DB=WormBase Gene ID /WP=CE07830 /TR=O16204 /GB=AAB65269.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026188(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026188 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-36) (srbc-36) mRNA, complete cds. 10/11 None
C02A12.6b ENSEMBL cdna:known chromosome:CEL140:V:3488555:3490346:-1 gene:C02A12.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026187 8/11 Cross Hyb Matching Probes None
SNAP00000023221 8/11 Cross Hyb Matching Probes None
C02A12.6a 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
182098 2 1 NM_001026188 185093_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3488554-3490346(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-36
Ensembl C02A12.6
Entrez Gene 182098 Entrez gene
SwissProt Q5F4V0 EMBL-EBI
WormBase CE38026 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021359 Serpentine Receptor, class BC (class B-like) family member (srbc-36) [Caenorhabditis elegans] 1.0E-159
blast T03859 hypothetical protein C02A12.6 - Caenorhabditis elegans 1.0E-140
blast AAW88416 Serpentine receptor, class bc (class b-like) protein 36 [Caenorhabditis elegans] ref|NP_001021358.1| Serpentine Receptor, class BC (class B-like) family member (srbc-36) [Caenorhabditis elegans] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.0E-126
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 0.13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021359.1 7 5-27,44-66,81-103,124-146,175-197,218-240,255-274
C02A12.6b 7 5-27,44-66,81-103,124-146,175-197,218-240,255-274
Sequence
Target Sequence 
>C. ELEGANS:185093_AT
cgatagatttatcgccgcctacttcccaatctcatatcttcaaaaacgaagcaaaattct
gacttggccaattttcctgatagctattttctttggactttccgaagagctaacactttt
tggattctgctcatatgatatggaaattccgtcgacctgccgagtattcgggtgtgcaat
gaacaagtgcttttataatttttggacaattcacagaagtgtcatattttccttgatagt
gatattttccattatgctgtcaataagactattcatttggaacatggtgaaaaataagaa
aaataagaataacctttccaaggcaaatcgtctagctctacttgacatgtgtacgcacgt
cggaccgtacaatgcggcgctgaaaatcacgggatgtgctatcgaagcgttggttgtaac
actggttttgatgttcagacaaactaaaaaatcatcaagtattcagccgggaacgatcct
cgtcggtccttacaatgcggtctttaagatcactggatgtgcaattgactcattcttgat
caccagacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATAGATTTATCGCCGCCTACTTC 328 249 327 Antisense
TACTTCCCAATCTCATATCTTCAAA 473 645 346 Antisense
TTCTGACTTGGCCAATTTTCCTGAT 583 689 383 Antisense
GCTAACACTTTTTGGATTCTGCTCA 219 303 435 Antisense
GATATGGAAATTCCGTCGACCTGCC 33 425 463 Antisense
GTCGACCTGCCGAGTATTCGGGTGT 16 475 477 Antisense
AACCTTTCCAAGGCAAATCGTCTAG 27 145 637 Antisense
TTGACATGTGTACGCACGTCGGACC 478 705 668 Antisense
ACGTCGGACCGTACAATGCGGCGCT 108 95 683 Antisense
AGTATTCAGCCGGGAACGATCCTCG 422 61 784 Antisense
GACTCATTCTTGATCACCAGACTTT 679 373 853 Antisense
Sequence Source Affymetrix Proprietary Database