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[185092_at]

Description K12H6.12 /REP_DB=WormBase Gene ID /WP=CE20015 /TR=Q9N5H8 /GB=AAF39941.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      6grp_highest_nonorm > 90      6grp_total > 04      4grp_total > 21      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 141.6
(-1.3)
P 		124.8
(-3)
A 		131.2
(-2.3)
P 		182.5
(3)
A 		58
B 195.2
(2.6)
P 		155.3
(-0.2)
A 		115.5
(-3)
M 		200.7
(3)
M 		85
C 200.4
(3)
P 		175.4
(0.7)
P 		135.3
(-3)
P 		190.6
(2.1)
A 		65
avr 179.1
(1.9) 		151.8
(-0.7) 		127.3
(-3) 		191.3
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 185.7
(3)
P 		171
(2)
P 		118.8
(-1.3)
P 		177.2
(2.4)
P 		157.2
(1.1)
P 		93.4
(-3)
P 		92
B 183
(2.5)
P 		151.2
(0.3)
P 		190.4
(3)
P 		107
(-2.8)
P 		150.6
(0.2)
P 		104.2
(-3)
P 		86
C 167.3
(1.6)
P 		183.5
(3)
P 		150
(0.1)
P 		134.2
(-1.3)
P 		114.5
(-3)
P 		140.5
(-0.7)
P 		69
avr 178.7
(3) 		168.6
(2.1) 		153.1
(0.7) 		139.5
(-0.6) 		140.8
(-0.4) 		112.7
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 51.5
(3)
P 		27.1
(-2.9)
A 		34.3
(-1.2)
P 		26.7
(-3)
A 		25
B 62.3
(3)
P 		38.4
(-1)
A 		26.8
(-3)
M 		42.8
(-0.3)
M 		36
C 66.3
(3)
P 		50.4
(0.2)
P 		47.1
(-0.4)
P 		32.1
(-3)
A 		34
avr 60
(3) 		38.6
(-1.9) 		36.1
(-2.5) 		33.9
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 34.2
(-1.2)
P 		60.8
(3)
P 		25.9
(-2.5)
P 		44.9
(0.5)
P 		47.4
(0.9)
P 		22.8
(-3)
P 		38
B 63.7
(3)
P 		50.3
(0.7)
P 		46.2
(0)
P 		28.3
(-3)
P 		61.2
(2.6)
P 		38.8
(-1.2)
P 		35
C 62
(3)
P 		56
(2)
P 		38.2
(-1.1)
P 		27
(-3)
P 		37.1
(-1.3)
P 		47
(0.4)
P 		35
avr 53.3
(2.4) 		55.7
(3) 		36.8
(-2.1) 		33.4
(-3) 		48.6
(1.1) 		36.2
(-2.2) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5737
Sequence Type Exemplar sequence
Representative Public ID K12H6.12 NCBI
Target Description K12H6.12 /REP_DB=WormBase Gene ID /WP=CE20015 /TR=Q9N5H8 /GB=AAF39941.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061968 NCBI Caenorhabditis elegans K12H6.12 (K12H6.12) mRNA, complete cds. 11/11 None
SNAP00000024507 ENSEMBL cdna:SNAP chromosome:CEL140:II:2809821:2815578:1 11/11 None
GENEFINDER00000024518 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2808166:2812828:1 11/11 None
K12H6.12 ENSEMBL cdna:known chromosome:CEL140:II:2809821:2812828:1 gene:K12H6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2809819-2812827(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12H6.12
Entrez Gene 187348 Entrez gene
SwissProt Q9N5H8 EMBL-EBI
WormBase CE20015 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494369 K12H6.12 [Caenorhabditis elegans] gb|AAF39941.1| Hypothetical protein K12H6.12 [Caenorhabditis elegans] 0.0
blast CAE72431 Hypothetical protein CBG19597 [Caenorhabditis briggsae] 9.0E-36
blast CAE72431 Hypothetical protein CBG19597 [Caenorhabditis briggsae] 8.0E-32
Sequence
Target Sequence 
>C. ELEGANS:185092_AT
gccgcgcaaactgctcggaatgtggagaattcgaagcagcggcaggaaaatcggagccgc
ccgagccgggagcccagttccatgacacctcagccactcgattgtaatgttcacgtgatt
ccaattaggaaagcaatcagaggaaaggaacagacaatcaccaacttgaaaacctaccac
tgttacgaatgtcgtcaagatgttcagtgtgttctgggcgctgaaaatctcacggcagga
ccactaatcagtcatttgagtaccaaacactccttccagtgtgttccatggaaatgtgat
gagtgtggatacaaaaatgcggtccagtggaaagtccgccaacatatttgcgtccgacac
ccggaaaacgcctacaaaatccaagtgtctgcaacgaagaaaaacgaatggaaattattt
ctcagatattattttaaggatttgggggatgtggtccccgaatgcaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGCGCAAACTGCTCGGAATGTGG 710 285 613 Antisense
CACCTCAGCCACTCGATTGTAATGT 464 201 698 Antisense
ACCTACCACTGTTACGAATGTCGTC 460 85 784 Antisense
AGATGTTCAGTGTGTTCTGGGCGCT 427 65 810 Antisense
CTGGGCGCTGAAAATCTCACGGCAG 57 241 826 Antisense
ATCTCACGGCAGGACCACTAATCAG 198 31 839 Antisense
AAACACTCCTTCCAGTGTGTTCCAT 438 129 877 Antisense
GCGGTCCAGTGGAAAGTCCGCCAAC 662 287 931 Antisense
GTCCGCCAACATATTTGCGTCCGAC 96 477 946 Antisense
ACGCCTACAAAATCCAAGTGTCTGC 479 91 980 Antisense
GGGATGTGGTCCCCGAATGCAATGA 170 495 1058 Antisense
Sequence Source Affymetrix Proprietary Database