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[185091_at]

Description Y106G6D.5 /REP_DB=WormBase Gene ID /WP=CE19303 /TR=Q9XX59 /GB=CAA20978.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 71      6grp_total > 50      4grp_total > 54      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 367.1
(3)
P 		197.9
(-2.3)
P 		235.6
(-1.1)
P 		173.9
(-3)
P 		193
B 368.3
(3)
P 		269.4
(-0.7)
P 		207.9
(-3)
P 		239.2
(-1.8)
P 		160
C 374.9
(3)
P 		289.1
(0.2)
P 		283.3
(0)
P 		189.8
(-3)
P 		185
avr 370.1
(3) 		252.1
(-1.2) 		242.3
(-1.5) 		201
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 335.5
(-1.1)
P 		399.3
(0.8)
P 		369.7
(-0.1)
P 		473.6
(3)
P 		287.7
(-2.5)
P 		270.7
(-3)
P 		203
B 305
(-1.7)
P 		330.3
(-1)
P 		469.6
(3)
P 		344.7
(-0.6)
P 		290.8
(-2.1)
P 		259.7
(-3)
P 		210
C 332.7
(-1.3)
P 		334.3
(-1.3)
P 		484.5
(2.5)
P 		503.9
(3)
P 		266.9
(-3)
P 		288.2
(-2.5)
P 		237
avr 324.4
(-1.2) 		354.6
(-0.1) 		441.3
(3) 		440.7
(3) 		281.8
(-2.7) 		272.9
(-3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 133.7
(3)
P 		43
(-2)
P 		61.6
(-1)
P 		25.5
(-3)
P 		108
B 117.5
(3)
P 		66.5
(-1.4)
P 		48.2
(-3)
P 		51
(-2.8)
P 		69
C 124.1
(3)
P 		83.1
(0.3)
P 		98.7
(1.3)
P 		32
(-3)
P 		92
avr 125.1
(3) 		64.2
(-1.1) 		69.5
(-0.8) 		36.2
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 61.8
(-3)
P 		142
(3)
P 		80.5
(-1.6)
P 		120.1
(1.4)
P 		86.8
(-1.1)
P 		65.9
(-2.7)
P 		80
B 106.1
(0.3)
P 		109.9
(1.2)
P 		114
(2.1)
P 		91.3
(-3)
P 		118.1
(3)
P 		96.8
(-1.8)
P 		27
C 123.3
(3)
P 		102
(-0.5)
P 		123.3
(3)
P 		101.3
(-0.6)
P 		86.4
(-3)
P 		96.5
(-1.4)
P 		37
avr 97.1
(-1) 		118
(3) 		105.9
(0.7) 		104.2
(0.4) 		97.1
(-1) 		86.4
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.698
Sequence Type Exemplar sequence
Representative Public ID Y106G6D.5 NCBI
Target Description Y106G6D.5 /REP_DB=WormBase Gene ID /WP=CE19303 /TR=Q9XX59 /GB=CAA20978.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060268(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060268 NCBI Caenorhabditis elegans Y106G6D.6 (Y106G6D.6) mRNA, complete cds. 11/11 None
SNAP00000020353 ENSEMBL cdna:SNAP chromosome:CEL140:I:10127684:10130199:-1 11/11 None
GENEFINDER00000020357 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10127684:10130199:-1 11/11 None
Y106G6D.6 ENSEMBL cdna:known chromosome:CEL140:I:10126201:10130223:-1 gene:Y106G6D.6 11/11 A 
Y106G6D.5 ENSEMBL cdna:pseudogene chromosome:CEL140:I:10127684:10130199:-1 gene:Y106G6D.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10127614-10130130(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6D.6
Y106G6D.5
Entrez Gene 190917 Entrez gene
SwissProt Q9XX58 EMBL-EBI
WormBase CE19304 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26415 hypothetical protein Y106G6D.5 - Caenorhabditis elegans 0.0
blast CAE66840 Hypothetical protein CBG12210 [Caenorhabditis briggsae] 0.0
blast AAH00290 IGHMBP2 protein [Homo sapiens] 2.0E-61
blast CAA20979 Hypothetical protein Y106G6D.6 [Caenorhabditis elegans] ref|NP_492669.1| Y106G6D.6 [Caenorhabditis elegans] 3.0E-54
blast CAE66841 Hypothetical protein CBG12211 [Caenorhabditis briggsae] 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:185091_AT
aactgacagcacattcaaccgtttctgacatcactctacgagatatttgtccaaatcttc
cggaagatcacgtattaaataatccgattatgatgattaatatggaaaatgttaaagata
gatcccacgaagaattcgaatcacattcattcacaaacactgacgaattgaatttggtaa
cagaatatgtcaatcgattggtagttgacttgggaattaatccaaaggcaatcgctgtaa
tttcaccgtattatgctcagatcgaaaaactacgacgatctatccccttccgagtcgatg
tcaatacagttgacgcattccaaggtcacgaacgtcaagtggtcattttctgtcttgtca
gagataatgatgaaggccaaattggattcttgaatgaaactcgccgattgaatgttgcag
ttactcgagcaagaagacaatttgttttgattggaaatggacgaatgatgaaaggaaata
aacatcttttaaaactctacaaacaccttcaatcggaaaaagtcatcttcggaccgtcaa
ttctcgaaaccttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGACAGCACATTCAACCGTTTC 669 137 1496 Antisense
CAACCGTTTCTGACATCACTCTACG 457 187 1511 Antisense
GGCAATCGCTGTAATTTCACCGTAT 703 531 1722 Antisense
GAAAAACTACGACGATCTATCCCCT 616 355 1759 Antisense
TCCCCTTCCGAGTCGATGTCAATAC 480 595 1778 Antisense
ACGCATTCCAAGGTCACGAACGTCA 652 91 1808 Antisense
AAGTGGTCATTTTCTGTCTTGTCAG 637 159 1832 Antisense
GAAACTCGCCGATTGAATGTTGCAG 567 357 1891 Antisense
AAAACTCTACAAACACCTTCAATCG 536 129 1986 Antisense
GAAAAAGTCATCTTCGGACCGTCAA 554 353 2011 Antisense
GACCGTCAATTCTCGAAACCTTCAA 219 383 2027 Antisense
Sequence Source Affymetrix Proprietary Database