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[185090_at]

Description Y46D2A.3 /REP_DB=WormBase Gene ID /WP=CE25301 /TR=Q9N4W9 /GB=AAF60608.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.4
(-3)
A 		5.9
(0.5)
A 		7.7
(3)
A 		5.9
(0.5)
A 		4
B 4
(-3)
A 		6.1
(-0.3)
A 		8.6
(3)
A 		8.2
(2.5)
A 		5
C 4.2
(-3)
A 		4.5
(-0.8)
A 		4.6
(-0)
A 		5
(3)
A 		1
avr 3.9
(-3) 		5.5
(0.1) 		7
(3) 		6.4
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.9
(-0.8)
A 		4.3
(-2.8)
A 		4.1
(-3)
A 		4.8
(-2.1)
A 		8.9
(3)
A 		4.4
(-2.6)
A 		5
B 5.4
(2.2)
A 		4.5
(0.4)
A 		5.8
(3)
A 		3.6
(-1.4)
A 		4.7
(0.8)
A 		2.8
(-3)
A 		3
C 3.1
(-1.4)
A 		2.9
(-1.7)
A 		6
(3)
A 		4.3
(0.5)
A 		4.7
(1.1)
A 		2
(-3)
A 		4
avr 4.8
(0.4) 		3.9
(-1.4) 		5.3
(1.4) 		4.2
(-0.8) 		6.1
(3) 		3.1
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.2
(-1.4)
A 		1.3
(-0.8)
A 		2
(3)
A 		0.9
(-3)
A 		1
B 1.3
(-3)
A 		1.5
(-1.3)
A 		2
(3)
A 		1.7
(0.4)
A 		1
C 1.4
(1.5)
A 		1.3
(0.8)
A 		1.6
(3)
A 		0.8
(-3)
A 		1
avr 1.3
(-1.5) 		1.4
(-0.8) 		1.9
(3) 		1.1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(-2.3)
A 		1.5
(-1)
A 		0.9
(-3)
A 		1.2
(-2)
A 		2.7
(3)
A 		1.1
(-2.3)
A 		2
B 1.9
(3)
A 		1.5
(0.6)
A 		1.4
(-0)
A 		0.9
(-3)
A 		1.9
(3)
A 		1
(-2.4)
A 		1
C 1.1
(0)
A 		0.9
(-1.5)
A 		1.5
(3)
A 		0.9
(-1.5)
A 		1.5
(3)
A 		0.7
(-3)
A 		1
avr 1.4
(-0.3) 		1.3
(-0.8) 		1.3
(-0.8) 		1
(-2.5) 		2
(3) 		0.9
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5740
Sequence Type Exemplar sequence
Representative Public ID Y46D2A.3 NCBI
Target Description Y46D2A.3 /REP_DB=WormBase Gene ID /WP=CE25301 /TR=Q9N4W9 /GB=AAF60608.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062106 NCBI Caenorhabditis elegans Y46D2A.3 (Y46D2A.3) mRNA, complete cds. 11/11 None
Y46D2A.3 ENSEMBL cdna:known chromosome:CEL140:II:3326507:3327035:-1 gene:Y46D2A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3326505-3327034(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46D2A.3
Entrez Gene 189953 Entrez gene
SwissProt Q9N4W9 EMBL-EBI
WormBase CE25301 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494507 Y46D2A.3 [Caenorhabditis elegans] gb|AAF60608.1| Hypothetical protein Y46D2A.3 [Caenorhabditis elegans] 2.0E-41
blast CAE58682 Hypothetical protein CBG01856 [Caenorhabditis briggsae] 2.0E-18
blast CAE56519 Hypothetical protein CBG24242 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:185090_AT
tggagaatccagaacactgcccaggcacctggacgccttggataaacgtaaaaggtgcaa
tgtgtaatgatacttgtggaaactgcgggctcatcgatcaataccggatatgttatccga
tacgctgcaagtgcagtggccctacaaaacgcaaagctccatgtgcgaataggccgtgcc
cattcccaagaacgacttgctgtccgggatacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGAATCCAGAACACTGCCCAGG 450 549 14 Antisense
GGCACCTGGACGCCTTGGATAAACG 420 533 37 Antisense
GATACTTGTGGAAACTGCGGGCTCA 248 421 82 Antisense
GCGGGCTCATCGATCAATACCGGAT 275 293 98 Antisense
GTTATCCGATACGCTGCAAGTGCAG 90 447 125 Antisense
GCAAGTGCAGTGGCCCTACAAAACG 8 321 140 Antisense
CCCTACAAAACGCAAAGCTCCATGT 443 257 153 Antisense
AGCTCCATGTGCGAATAGGCCGTGC 323 81 168 Antisense
CATGTGCGAATAGGCCGTGCCCATT 87 211 173 Antisense
TGCCCATTCCCAAGAACGACTTGCT 685 543 190 Antisense
AACGACTTGCTGTCCGGGATACAAC 321 145 204 Antisense
Sequence Source Affymetrix Proprietary Database