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[185089_s_at]

Description Y76G2A.2 /REP_DB=WormBase Gene ID /WP=CE23068 /TR=Q9TXY6 /GB=AAC78489.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 6.6
(-3)
A 		23
(-2.2)
A 		22.5
(-2.3)
A 		135.7
(3)
P 		129
B 62.2
(1.8)
A 		12.1
(-3)
A 		32.4
(-1.1)
A 		75.1
(3)
P 		63
C 69.8
(-0.6)
A 		20.1
(-2.5)
A 		6.2
(-3)
A 		167.9
(3)
P 		162
avr 46.2
(-1.5) 		18.4
(-3) 		20.4
(-2.9) 		126.2
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 112
(3)
A 		2.3
(-3)
A 		20.3
(-2)
A 		20.5
(-2)
A 		41
(-0.9)
A 		54.3
(-0.2)
A 		110
B 5.3
(-3)
A 		25.5
(-0.7)
A 		19
(-1.4)
A 		18.1
(-1.5)
A 		54.7
(2.7)
A 		57.2
(3)
A 		52
C 39.4
(1.4)
A 		52.8
(3)
A 		3.7
(-3)
A 		10.8
(-2.1)
A 		26.2
(-0.3)
A 		48.8
(2.5)
A 		49
avr 52.2
(2.8) 		26.9
(-1.1) 		14.3
(-3) 		16.5
(-2.7) 		40.6
(1) 		53.4
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2.4
(-3)
A 		5
(-2.1)
A 		5.9
(-1.8)
A 		19.9
(3)
P 		18
B 19.8
(3)
A 		3
(-3)
A 		7.5
(-1.4)
A 		16
(1.6)
P 		17
C 23.1
(1.8)
A 		5.8
(-2.2)
A 		2.2
(-3)
A 		28.3
(3)
P 		26
avr 15.1
(0.8) 		4.6
(-3) 		5.2
(-2.8) 		21.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 20.6
(3)
A 		0.8
(-3)
A 		4.4
(-1.9)
A 		5.2
(-1.7)
A 		12.4
(0.5)
A 		13.2
(0.8)
A 		20
B 1.9
(-3)
A 		8.5
(-1)
A 		4.6
(-2.2)
A 		4.8
(-2.1)
A 		22.2
(3)
A 		21.3
(2.7)
A 		20
C 14.6
(2.3)
A 		16.1
(2.9)
A 		0.9
(-3)
A 		2.2
(-2.5)
A 		8.5
(-0)
A 		16.3
(3)
A 		15
avr 12.4
(1) 		8.5
(-0.7) 		3.3
(-3) 		4.1
(-2.6) 		14.4
(1.9) 		16.9
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185089_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2034
Sequence Type Exemplar sequence
Representative Public ID Y76G2A.2 NCBI
Target Description Y76G2A.2 /REP_DB=WormBase Gene ID /WP=CE23068 /TR=Q9TXY6 /GB=AAC78489.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059324(11), NM_059328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059324 NCBI Caenorhabditis elegans Y76G2A.2 (Y76G2A.2) mRNA, complete cds. 11/11 A 
NM_059328 NCBI Caenorhabditis elegans C06A5.10 (C06A5.10) mRNA, complete cds. 11/11 None
Y76G2A.2 ENSEMBL cdna:known chromosome:CEL140:I:5987118:5987568:1 gene:Y76G2A.2 11/11 None
C06A5.10 ENSEMBL cdna:known chromosome:CEL140:I:5990654:5991104:-1 gene:C06A5.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037997 2/11 Cross Hyb Matching Probes None
SNAP00000012784 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5985491-5987568(+) 74.12 92.28
Public Domain and Genome References
Gene Title

Ensembl Y76G2A.2
C06A5.10
Entrez Gene 3564771 Entrez gene
3565976 Entrez gene
SwissProt O01476 EMBL-EBI
WormBase CE07957 Wormbase
CE07957 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78489 Hypothetical protein Y76G2A.2 [Caenorhabditis elegans] gb|AAB52445.1| Hypothetical protein C06A5.10 [Caenorhabditis elegans] ref|NP_491725.2| Y76G2A.2 [Caenorhabditis elegans] ref|NP_491729.1| C06A5.10 [Caenorhabditis elegans] 4.0E-41
blast NP_001022086 F14D2.4b [Caenorhabditis elegans] gb|AAQ65204.1| Hypothetical protein F14D2.4b [Caenorhabditis elegans] 2.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491725.2 1 21-40
NP_491729.1 1 21-40
Y76G2A.2 1 21-40
C06A5.10 1 21-40
Sequence
Target Sequence 
>C. ELEGANS:185089_S_AT
cggcgggacccattcgatgaaaagtcggtgtccctttaacaatcgatattgcggaggcct
ttttcagggattttttcgattttttcatatatttctaatcgtcccaatcaacaagctcac
tcttcaacagttcgagatgctcaacacgtgtgctcaatatgttcaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCGGGACCCATTCGATGAAAAGT 37 241 522 Antisense
TTCGATGAAAAGTCGGTGTCCCTTT 545 687 534 Antisense
AGTCGGTGTCCCTTTAACAATCGAT 323 49 544 Antisense
GTGTCCCTTTAACAATCGATATTGC 159 483 549 Antisense
AATCGATATTGCGGAGGCCTTTTTC 552 167 562 Antisense
GATATTGCGGAGGCCTTTTTCAGGG 339 427 566 Antisense
TGCGGAGGCCTTTTTCAGGGATTTT 390 583 571 Antisense
TTTCGATTTTTTCATATATTTCTAA 409 671 595 Antisense
CATATATTTCTAATCGTCCCAATCA 46 215 607 Antisense
GCTCAACACGTGTGCTCAATATGTT 138 301 660 Antisense
ACACGTGTGCTCAATATGTTCAAAC 190 111 665 Antisense
Sequence Source Affymetrix Proprietary Database